RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SCGB1D4Q6XE38 83 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 ARL17AQ8IVW1 177 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 TOMM6Q96B49 74 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 MRPL53Q96EL3 112 aaKnown RBP2.2□□□□□ -2.06
SLIRP-208ENST00000556956 CARD19Q96LW7 228 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 SLC50A1Q9BRV3 221 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 TTTY13Q9BZ97 58 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 KAAG1Q9UBP8 84 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 GAGE2DQ9UEU5 116 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 SS18L2Q9UHA2 77 aa2.2□□□□□ -2.06
SLIRP-208ENST00000556956 CHD3Q12873 2000 aaKnown RBP2.2□□□□□ -2.06
SLIRP-208ENST00000556956 GOLGA4Q13439 2230 aaKnown RBP2.19□□□□□ -2.06
SLIRP-208ENST00000556956 ARID1AO14497 2285 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 IGHV4-4A0A075B6R2 117 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 IGHV3-72A0A0B4J1Y9 119 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TRAV8-4A0A0B4J246 113 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 ZNF815PA8K554 130 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 C17orf100A8MU93 164 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 BUB1B-PAK6H3BSN5 160 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 H3BVH4 76 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 M0R3E3 92 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 APELAP0DMC3 54 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 SRD5A1P18405 259 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 GNLYP22749 145 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 CNTFRP26992 372 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 HLA-DMBP28068 263 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 LOXP28300 417 aaPredicted RBP2.19□□□□□ -2.06
SLIRP-208ENST00000556956 ARL3P36405 182 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 ZNF80P51504 273 aaPredicted RBP2.19□□□□□ -2.06
SLIRP-208ENST00000556956 XGP55808 180 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 UBE2D3P61077 147 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 UBE2D2P62837 147 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 CCL8P80075 99 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 ERCC8Q13216 396 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TMEM95Q3KNT9 176 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 SPANXN1Q5VSR9 72 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 DGAT2L7PQ6IED9 249 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 IGFL2Q6UWQ7 119 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 GFRALQ6UXV0 394 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 IL17RELQ6ZVW7 336 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 NFE4Q86UQ8 179 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 NDUFA11Q86Y39 141 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TMEM105Q8N8V8 129 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 NEXN-AS1Q8NBZ9 246 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 NPBQ8NG41 125 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TIMD4Q96H15 378 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TMEM141Q96I45 108 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 FAM110AQ9BQ89 295 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 PRADC1Q9BSG0 188 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 TMEM126AQ9H061 195 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 PRO3102Q9H379 93 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 FBXL15Q9H469 300 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 PRO1854Q9UHT4 67 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 UFC1Q9Y3C8 167 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 COL27A1Q8IZC6 1860 aaPredicted RBP2.19□□□□□ -2.06
SLIRP-208ENST00000556956 KIAA1549Q9HCM3 1950 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 FER1L5A0AVI2 2057 aa2.19□□□□□ -2.06
SLIRP-208ENST00000556956 PCDH15Q96QU1 1955 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 LAMA3Q16787 3333 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 NCOA6Q14686 2063 aaPredicted RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGLV11-55A0A075B6I3 123 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 TRAV8-2A0A0B4J237 113 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGHV1-69DA0A0B4J2H0 117 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGKV3D-20A0A0C4DH25 116 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 TRBV7-9A0A0J9YWB2 115 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 CENPVL3A0A0U1RRI6 287 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 LY6LH3BQJ8 138 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 M0R381 172 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 NBR2O15453 112 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 SLC25A20O43772 301 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 FCN3O75636 299 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 TCL1BO95988 128 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGKV3-20P01619 116 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGLV1-47P01700 117 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 IGHG4P01861 327 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 P0DMU3 169 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 FAM231AP0DMU4 169 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 FAM231CP0DMU5 169 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 GATA1P15976 413 aaPredicted RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 NDUFV3P56181 108 aaKnown RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 RPL32P62910 135 aaKnown RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 ATXN8Q156A1 80 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 ODF3L2Q3SX64 289 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 PRR30Q53SZ7 412 aaPredicted RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 LYPD2Q6UXB3 125 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 ZFP2Q6ZN57 461 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 Q71RC1 249 aaPredicted RBP2.18□□□□□ -2.06
SLIRP-208ENST00000556956 C10orf126Q8N4M7 172 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 ANKRD29Q8N6D5 301 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 OR10J6PQ8NGY7 276 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 BAALCQ8WXS3 180 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 CCL17Q92583 94 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 LINC01600Q96MT4 127 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 CITED1Q99966 193 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 SMIM2Q9BVW6 85 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 DPH3P1Q9H4G8 78 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 SPANXCQ9NY87 97 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 C21orf62Q9NYP8 219 aa2.18□□□□□ -2.06
SLIRP-208ENST00000556956 ONECUT1Q9UBC0 465 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 395 ms