RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 UBE2DNLQ8IWF7 75 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 CMTM2Q8TAZ6 248 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 ACTR3CQ9C0K3 210 aaPredicted RBP7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 TRAV26-1A0A087WT03 109 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 BORCS7-ASMTA0A0B4J1R7 106 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 M0R2N4 97 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 SCO1O75880 301 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 NUDT3O95989 172 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 FAM3BP58499 235 aaPredicted RBP7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 OR5I1Q13606 314 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 MUC21Q5SSG8 566 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 TMPRSS5Q9H3S3 457 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 RPH3ALQ9UNE2 315 aa7.16□□□□□ -1.26
CCDC88C-206ENST00000553437 IGLV2-18A0A075B6J9 118 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 TRGV1A0A0A0MS02 117 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 GGTLC3B5MD39 225 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 RTL8CO15255 209 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 CXorf1O96002 111 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 TCRAP04437 139 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 C5orf17Q8NAS9 161 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 VSIG2Q96IQ7 327 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 TMEM167BQ9NRX6 74 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 MDFICQ9P1T7 246 aa7.15□□□□□ -1.26
CCDC88C-206ENST00000553437 TRGV2A0A075B6R0 118 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 A0A0J9YY99 117 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 SERTM2A0A1B0GWG4 89 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 H3BNG1 76 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 IGLV2-11P01706 119 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 SUMO1P63165 101 aaKnown RBP7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 DYNC1H1Q14204 4646 aaKnown RBP7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 TDRG1Q3Y452 100 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 ZNRF2Q8NHG8 242 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 SGK494Q96LW2 274 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 KRTAP4-7Q9BYR0 210 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 MRPL16Q9NX20 251 aaKnown RBP7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 LINC00588Q9Y4M8 146 aa7.14□□□□□ -1.27
CCDC88C-206ENST00000553437 CTXND1A0A1B0GTU2 59 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 F6UZH7 168 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 BLOC1S1P78537 153 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 ZNF415Q09FC8 603 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 TMEM183BQ1AE95 376 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 FAM159AQ6UWV7 190 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 LINC00336Q6ZUF6 198 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 TMEM183AQ8IXX5 376 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 ATG101Q9BSB4 218 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 TREM1Q9NP99 234 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 EPDR1Q9UM22 224 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 PSG8Q9UQ74 426 aa7.13□□□□□ -1.27
CCDC88C-206ENST00000553437 TRGV11A0A075B6L2 103 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 TRAV21A0A0B4J279 112 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 IGHV3-16A0A0C4DH30 117 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 LOC105371267A0A1B0GV96 52 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 A0A1B0GVY2 172 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 A0A1W2PRE2 83 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 GNRH2O43555 120 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 SULT1A2P50226 295 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 ZNF80P51504 273 aaPredicted RBP7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 CCL18P55774 89 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 ESRGQ1W209 222 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 AKR1C8PQ5T2L2 129 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 RASL10AQ92737 203 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 C8orf49Q96NF6 230 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 SPXQ9BT56 116 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 PKD1P98161 4303 aa7.12□□□□□ -1.27
CCDC88C-206ENST00000553437 ABCA13Q86UQ4 5058 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 DNAH11Q96DT5 4516 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 PKHD1P08F94 4074 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 A0A096LPF7 62 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 TMEM218A2RU14 115 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 IGHV3-53P01767 116 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 APOC3P02656 99 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 FGF8P55075 233 aaPredicted RBP7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 FLI1Q01543 452 aaPredicted RBP7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 FHL2Q14192 279 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 IQCF2Q8IXL9 164 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 CYB561D1Q8N8Q1 229 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 LINC00479Q96M42 142 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 C11orf21Q9P2W6 132 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 NAGKQ9UJ70 344 aa7.11□□□□□ -1.27
CCDC88C-206ENST00000553437 NBDYA0A0U1RRE5 68 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 MAP1LC3B2A6NCE7 125 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 FAM74A7A6NL05 159 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 K7EQM0 130 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 TYMSP04818 313 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 SEC11BP0C7V7 166 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 FHITP49789 147 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 UBE2G2P60604 165 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 PRNTQ86SH4 94 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 SVBPQ8N300 66 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 TMEM75Q8N9X5 138 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 NDFIP1Q9BT67 221 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 MAP1LC3BQ9GZQ8 125 aa7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 CARHSP1Q9Y2V2 147 aaKnown RBP7.1□□□□□ -1.27
CCDC88C-206ENST00000553437 TRAV34A0A0B4J273 112 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 FBLL1A6NHQ2 334 aaKnown RBP7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 PRSS29PA6NIE9 313 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 M0R2P5 195 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 PAX4O43316 350 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 GCGP01275 180 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms