RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CD300EQ496F6 205 aaPredicted RBP13.4□□□□□ -0.26
SYNE3-202ENST00000553340 KLK15Q9H2R5 256 aa13.4□□□□□ -0.26
SYNE3-202ENST00000553340 U3KQE9 123 aa13.4□□□□□ -0.26
SYNE3-202ENST00000553340 SUMO2P61956 95 aaKnown RBP13.39□□□□□ -0.27
SYNE3-202ENST00000553340 TOMM6Q96B49 74 aa13.39□□□□□ -0.27
SYNE3-202ENST00000553340 LENEPQ9Y5L5 61 aa13.39□□□□□ -0.27
SYNE3-202ENST00000553340 CCL21O00585 134 aa13.39□□□□□ -0.27
SYNE3-202ENST00000553340 AZU1P20160 251 aa13.39□□□□□ -0.27
SYNE3-202ENST00000553340 GTSF1LQ9H1H1 148 aa13.39□□□□□ -0.27
SYNE3-202ENST00000553340 A0A1B0GWB2 263 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 GAGE12HA6NDE8 117 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 SCGB1A1P11684 91 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 GAGE13Q4V321 117 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 PRR9Q5T870 116 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 AMTNQ6UX39 209 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 C20orf78Q9BR46 151 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 TSSC4Q9Y5U2 329 aaPredicted RBP13.38□□□□□ -0.27
SYNE3-202ENST00000553340 UBE2E1P51965 193 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 ETDBQ3ZM63 59 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 NEXN-AS1Q8NBZ9 246 aa13.38□□□□□ -0.27
SYNE3-202ENST00000553340 LINC01548A6NM66 108 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 M0R381 172 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 C9orf139Q6ZV77 190 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 SH2D6Q7Z4S9 175 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 RASL10AQ92737 203 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 RAXQ9Y2V3 346 aa13.37□□□□□ -0.27
SYNE3-202ENST00000553340 ATP5G2Q06055 141 aa13.36□□□□□ -0.27
SYNE3-202ENST00000553340 DPH3P1Q9H4G8 78 aa13.36□□□□□ -0.27
SYNE3-202ENST00000553340 CYSLTR1Q9Y271 337 aa13.36□□□□□ -0.27
SYNE3-202ENST00000553340 S100A4P26447 101 aaKnown RBP13.36□□□□□ -0.27
SYNE3-202ENST00000553340 AJUBAQ96IF1 538 aa13.36□□□□□ -0.27
SYNE3-202ENST00000553340 J3KRW8 73 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 CIDEAO60543 219 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 SAA4P35542 130 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 SMAGPQ0VAQ4 97 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 SCGB2A2Q13296 93 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 LINC00477Q96M19 166 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 K7ENP7 123 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 HOXA3O43365 443 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-202ENST00000553340 CDSNQ15517 529 aa13.35□□□□□ -0.27
SYNE3-202ENST00000553340 SPAG8Q99932 426 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-202ENST00000553340 TLN1Q9Y490 2541 aaKnown RBP13.34□□□□□ -0.27
SYNE3-202ENST00000553340 TRAV21A0A0B4J279 112 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 CENPVL3A0A0U1RRI6 287 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 IGF1P05019 195 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 LGALS1P09382 135 aaKnown RBP13.34□□□□□ -0.27
SYNE3-202ENST00000553340 C2orf66Q6UXQ4 117 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 GLMPQ8WWB7 406 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 ITLN2Q8WWU7 325 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-202ENST00000553340 C20orf173Q96LM9 149 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 PHLDA3Q9Y5J5 127 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 ASIPP42127 132 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 C14orf178Q8N769 122 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-202ENST00000553340 BAALCQ8WXS3 180 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 RPL39LQ96EH5 51 aaKnown RBP13.34□□□□□ -0.27
SYNE3-202ENST00000553340 SPATA25Q9BR10 227 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 PRO0461Q9UI25 63 aa13.34□□□□□ -0.27
SYNE3-202ENST00000553340 TCF15Q12870 199 aa13.33□□□□□ -0.28
SYNE3-202ENST00000553340 ZFAND2AQ8N6M9 145 aa13.33□□□□□ -0.28
SYNE3-202ENST00000553340 OR10J6PQ8NGY7 276 aa13.33□□□□□ -0.28
SYNE3-202ENST00000553340 PRADC1Q9BSG0 188 aa13.33□□□□□ -0.28
SYNE3-202ENST00000553340 ZFHX2Q9C0A1 2572 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-202ENST00000553340 CACNA1BQ00975 2339 aa13.33□□□□□ -0.28
SYNE3-202ENST00000553340 MTURNQ8N3F0 131 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 TMEM238LA0A1B0GVL6 79 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 A6NJY4 79 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 SPRY2O43597 315 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 MGPP08493 103 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 MORN3Q6PF18 240 aaPredicted RBP13.32□□□□□ -0.28
SYNE3-202ENST00000553340 ATP6V0BQ99437 205 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 SPOCK3Q9BQ16 436 aa13.32□□□□□ -0.28
SYNE3-202ENST00000553340 PRSS29PA6NIE9 313 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 OVOL1O14753 267 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 PGPEP1Q9NXJ5 209 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 ZNF815PA8K554 130 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 PPP1R17O96001 155 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 SCGB1D4Q6XE38 83 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 C5orf56Q8N8D9 126 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 MED13LQ71F56 2210 aa13.31□□□□□ -0.28
SYNE3-202ENST00000553340 ADORA2A-AS1P86434 159 aa13.3□□□□□ -0.28
SYNE3-202ENST00000553340 MRPL16Q9NX20 251 aaKnown RBP13.3□□□□□ -0.28
SYNE3-202ENST00000553340 MED14OSP0DP75 135 aa13.3□□□□□ -0.28
SYNE3-202ENST00000553340 ANXA2RQ3ZCQ2 193 aa13.3□□□□□ -0.28
SYNE3-202ENST00000553340 FAM223BA6NKX1 122 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 ARL3P36405 182 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 FAM223AQ8IWN6 122 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 SPTBN2O15020 2390 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 TRAV41A0A0B4J266 112 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 RNF223E7ERA6 249 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 NDUFS8O00217 210 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 LCNL1Q6ZST4 164 aa13.29□□□□□ -0.28
SYNE3-202ENST00000553340 SRSF9Q13242 221 aaKnown RBP eCLIP13.28□□□□□ -0.28
SYNE3-202ENST00000553340 NPFFO15130 113 aa13.28□□□□□ -0.28
SYNE3-202ENST00000553340 GPHB5Q86YW7 130 aa13.28□□□□□ -0.28
SYNE3-202ENST00000553340 APOMO95445 188 aa13.27□□□□□ -0.28
SYNE3-202ENST00000553340 DLX4Q92988 240 aaPredicted RBP13.27□□□□□ -0.28
SYNE3-202ENST00000553340 RNASE4P34096 147 aaKnown RBP13.27□□□□□ -0.29
SYNE3-202ENST00000553340 INSL3P51460 131 aa13.27□□□□□ -0.29
SYNE3-202ENST00000553340 LINC01549A6NIU2 74 aa13.26□□□□□ -0.29
SYNE3-202ENST00000553340 COX6B1P14854 86 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms