RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ANXA2RQ3ZCQ2 193 aa11.71□□□□□ -0.54
CUX1-214ENST00000550008 DTX2Q86UW9 622 aa11.71□□□□□ -0.54
CUX1-214ENST00000550008 TMEM262E9PQX1 116 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 HOXA3O43365 443 aaPredicted RBP11.7□□□□□ -0.54
CUX1-214ENST00000550008 NPBQ8NG41 125 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 DPH3P1Q9H4G8 78 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 LINC00574Q9H8X3 128 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 TMEM238LA0A1B0GVL6 79 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 A6NJY4 79 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 RPL35AP18077 110 aaKnown RBP11.7□□□□□ -0.54
CUX1-214ENST00000550008 ORMDL2Q53FV1 153 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 IGF2BP2-AS1Q96M15 143 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 VCX2Q9H322 139 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 FAM231BA6NCW3 169 aa11.7□□□□□ -0.54
CUX1-214ENST00000550008 BCL6BQ8N143 479 aaPredicted RBP11.7□□□□□ -0.54
CUX1-214ENST00000550008 IGLL1P15814 213 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 LINC00173Q6ZV60 143 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 SIGLEC8Q9NYZ4 499 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 CHTOPQ9Y3Y2 248 aaKnown RBP11.69□□□□□ -0.54
CUX1-214ENST00000550008 GTSF1Q8WW33 167 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 TOMM7Q9P0U1 55 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 XCL2Q9UBD3 114 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 TCTEX1D4Q5JR98 221 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 MEIG1Q5JSS6 88 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 MRPL52Q86TS9 123 aaKnown RBP11.69□□□□□ -0.54
CUX1-214ENST00000550008 MS4A6AQ9H2W1 248 aa11.69□□□□□ -0.54
CUX1-214ENST00000550008 GTSF1LQ9H1H1 148 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 NDUFA4O00483 81 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 GAGE12BA1L429 117 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 LINC00322Q6ZN03 302 aaPredicted RBP11.68□□□□□ -0.54
CUX1-214ENST00000550008 C10orf105Q8TEF2 133 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 C20orf144Q9BQM9 153 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 MRPL16Q9NX20 251 aaKnown RBP11.68□□□□□ -0.54
CUX1-214ENST00000550008 COX11Q9Y6N1 276 aa11.68□□□□□ -0.54
CUX1-214ENST00000550008 LMO4P61968 165 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 GAGE1Q13065 139 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 OCIAD2Q56VL3 154 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 PAPPA-AS1Q5QFB9 102 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 PHLDA1Q8WV24 401 aaPredicted RBP11.67□□□□□ -0.54
CUX1-214ENST00000550008 CRYGCP07315 174 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 CFHR4Q92496 578 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 SIRPDQ9H106 197 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 EYSQ5T1H1 3165 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 TRGV1A0A0A0MS02 117 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 ZNF815PA8K554 130 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 GNRH2O43555 120 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 TRBV12-3P01733 135 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 GATA3P23771 443 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 CST9LQ9H4G1 147 aa11.67□□□□□ -0.54
CUX1-214ENST00000550008 COL5A1P20908 1838 aaPredicted RBP11.66□□□□□ -0.54
CUX1-214ENST00000550008 BUB3O43684 328 aa11.66□□□□□ -0.54
CUX1-214ENST00000550008 IGLC2P0DOY2 106 aa11.66□□□□□ -0.54
CUX1-214ENST00000550008 IGLC3P0DOY3 106 aa11.66□□□□□ -0.54
CUX1-214ENST00000550008 WIPF2Q8TF74 440 aaPredicted RBP11.66□□□□□ -0.54
CUX1-214ENST00000550008 COA6Q5JTJ3 125 aaKnown RBP11.66□□□□□ -0.54
CUX1-214ENST00000550008 CD28P10747 220 aa11.66□□□□□ -0.54
CUX1-214ENST00000550008 AJUBAQ96IF1 538 aa11.66□□□□□ -0.54
CUX1-214ENST00000550008 IGHV3-16A0A0C4DH30 117 aa11.65□□□□□ -0.54
CUX1-214ENST00000550008 C5orf56Q8N8D9 126 aa11.65□□□□□ -0.54
CUX1-214ENST00000550008 MRAP2Q96G30 205 aa11.65□□□□□ -0.54
CUX1-214ENST00000550008 TRGV11A0A075B6L2 103 aa11.65□□□□□ -0.54
CUX1-214ENST00000550008 COL4A2P08572 1712 aa11.65□□□□□ -0.54
CUX1-214ENST00000550008 IGHV7-4-1A0A0J9YVY3 117 aa11.64□□□□□ -0.55
CUX1-214ENST00000550008 INS-IGF2F8WCM5 200 aa11.64□□□□□ -0.55
CUX1-214ENST00000550008 UNQ9165/PRO28630Q6UXU0 137 aa11.64□□□□□ -0.55
CUX1-214ENST00000550008 Q6ZVH6 145 aa11.63□□□□□ -0.55
CUX1-214ENST00000550008 IGLV2-8P01709 118 aa11.63□□□□□ -0.55
CUX1-214ENST00000550008 LY6G5BQ8NDX9 201 aa11.63□□□□□ -0.55
CUX1-214ENST00000550008 TRGV4A0A0C4DH28 118 aa11.62□□□□□ -0.55
CUX1-214ENST00000550008 CKS1BP61024 79 aa11.62□□□□□ -0.55
CUX1-214ENST00000550008 SMPXQ9UHP9 88 aa11.62□□□□□ -0.55
CUX1-214ENST00000550008 OR5A1Q8NGJ0 315 aa11.62□□□□□ -0.55
CUX1-214ENST00000550008 TRAV2A0A0B4J234 112 aa11.61□□□□□ -0.55
CUX1-214ENST00000550008 NPC2P61916 151 aa11.61□□□□□ -0.55
CUX1-214ENST00000550008 CFHR3Q02985 330 aa11.61□□□□□ -0.55
CUX1-214ENST00000550008 C2orf66Q6UXQ4 117 aa11.61□□□□□ -0.55
CUX1-214ENST00000550008 C1orf159Q96HA4 380 aa11.61□□□□□ -0.55
CUX1-214ENST00000550008 HOXD3P31249 432 aaPredicted RBP11.61□□□□□ -0.55
CUX1-214ENST00000550008 WI2-2373I1.2A0A1W2PRP0 233 aa11.6□□□□□ -0.55
CUX1-214ENST00000550008 VCYO14598 125 aa11.6□□□□□ -0.55
CUX1-214ENST00000550008 SEC11AP67812 179 aa11.6□□□□□ -0.55
CUX1-214ENST00000550008 DKK2Q9UBU2 259 aa11.6□□□□□ -0.55
CUX1-214ENST00000550008 MAP1AP78559 2803 aaPredicted RBP11.6□□□□□ -0.55
CUX1-214ENST00000550008 KLF12Q9Y4X4 402 aa11.6□□□□□ -0.55
CUX1-214ENST00000550008 FLNBO75369 2602 aaKnown RBP11.6□□□□□ -0.55
CUX1-214ENST00000550008 SLURP1P55000 103 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 ANAPC13Q9BS18 74 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 ODF3BA8MYP8 253 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 SNCGO76070 127 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 ESDP10768 282 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 TEX43Q6ZNM6 134 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 TMEM190Q8WZ59 177 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 VPREB3Q9UKI3 123 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 TP53TG1Q9Y2A0 90 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 HSD52Q0P140 79 aa11.59□□□□□ -0.55
CUX1-214ENST00000550008 COL6A3P12111 3177 aa11.58□□□□□ -0.55
CUX1-214ENST00000550008 IGHV3-38A0A0C4DH36 116 aa11.58□□□□□ -0.55
CUX1-214ENST00000550008 SDHAF1A6NFY7 115 aa11.58□□□□□ -0.55
CUX1-214ENST00000550008 CIRBPQ14011 172 aaKnown RBP11.58□□□□□ -0.55
CUX1-214ENST00000550008 MRPL35Q9NZE8 188 aaKnown RBP11.58□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms