RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 VCYO14598 125 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 IGHV3-33P01772 117 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 CKS2P33552 79 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 SNRPD3P62318 126 aaKnown RBP4.1□□□□□ -1.75
CD44-236ENST00000533222 MDP1Q86V88 176 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 MKXQ8IYA7 352 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 ORMDL3Q8N138 153 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 SLC25A29Q8N8R3 303 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 EEF1AKMT3Q96AZ1 226 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 SLC50A1Q9BRV3 221 aa4.1□□□□□ -1.75
CD44-236ENST00000533222 MRPL35Q9NZE8 188 aaKnown RBP4.1□□□□□ -1.75
CD44-236ENST00000533222 TRAV7A0A075B6U4 112 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 IGKV1D-8A0A087WSZ0 117 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1BA6NDE4 496 aaKnown RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1EA6NEQ0 496 aaKnown RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 F8VRH5 84 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 LST1O00453 97 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 WNT9BO14905 357 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 TIMM17BO60830 172 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 NXPH4O95158 308 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1DP0C7P1 496 aaKnown RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1A1P0DJD3 496 aaKnown RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1CP0DJD4 496 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 XCL1P47992 114 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 CCL23P55773 120 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 ZNF816Q0VGE8 651 aaPredicted RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 RBMY1FQ15415 496 aaKnown RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 SPANXN5Q5MJ07 72 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.09□□□□□ -1.75
CD44-236ENST00000533222 C9orf57Q5W0N0 161 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 Q6ZVQ6 151 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 C11orf45Q8TAV5 145 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 KLK6Q92876 244 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 LYZL4Q96KX0 146 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 ZNF714Q96N38 554 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 TTTY10Q9BZA0 68 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 CXXC4Q9H2H0 198 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 ZNF355PQ9NSJ1 428 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 XCL2Q9UBD3 114 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 CTSZQ9UBR2 303 aa4.09□□□□□ -1.75
CD44-236ENST00000533222 IGLV3-32A0A0A0MS00 114 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 A0A0J9YX75 114 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 C8orf87E5RJ46 101 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 E7EQL1 145 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 H7C423 109 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 M0R378 163 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 PRSS2P07478 247 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 CD59P13987 128 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 COX6B1P14854 86 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 FGF12P61328 243 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 UBE2BP63146 152 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 FXYD3Q14802 87 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 KISS1Q15726 138 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 ASB16-AS1Q495Z4 193 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 LCE1AQ5T7P2 110 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 Q6ZR03 302 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 ZNF826PQ6ZT77 177 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 VMO1Q7Z5L0 202 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 LINC00596Q86U02 117 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 NUP37Q8NFH4 326 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 UBALD1Q8TB05 177 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 DYNLRB2Q8TF09 96 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 TOMM6Q96B49 74 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 TIMM21Q9BVV7 248 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 MOB4Q9Y3A3 225 aa4.08□□□□□ -1.76
CD44-236ENST00000533222 LOC100131303A0A0U1RQF7 123 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 A0A1W2PQD3 144 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 COX7A2P2O60397 106 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 SPINK4O60575 86 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 IGKV1D-16P01601 117 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 IGHV3-30P01768 117 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 IGHV3-30-5P0DP03 117 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 RPS18P62269 152 aaKnown RBP4.07□□□□□ -1.76
CD44-236ENST00000533222 LAGE3Q14657 143 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 PLGLAQ15195 96 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 ZNF818PQ6ZRF7 136 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 LCA10Q71F78 164 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 VN1R4Q7Z5H5 301 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 ZNF329Q86UD4 541 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 WFDC5Q8TCV5 224 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 TMEM263Q8WUH6 116 aaKnown RBP4.07□□□□□ -1.76
CD44-236ENST00000533222 C17orf77Q96MU5 243 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 CYSTM1Q9H1C7 97 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 UBE2D4Q9Y2X8 147 aa4.07□□□□□ -1.76
CD44-236ENST00000533222 HEATR1Q9H583 2144 aaKnown RBP4.07□□□□□ -1.76
CD44-236ENST00000533222 IGKV2D-30A0A075B6S6 120 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 TMSB15BA0A087X1C1 80 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 TRGV8A0A0C4DH27 118 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 J3QT63 122 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 IGHV4-30-4P0DP06 118 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 DSCR9P59020 149 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 FXYD4P59646 89 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 CXCL6P80162 114 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 KIAA0087Q14695 138 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 MRPL51Q4U2R6 128 aaKnown RBP4.06□□□□□ -1.76
CD44-236ENST00000533222 LYPD5Q6UWN5 251 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 GFRALQ6UXV0 394 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 ATP11AUNQ6ZP68 121 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 COX8CQ7Z4L0 72 aa4.06□□□□□ -1.76
CD44-236ENST00000533222 CD177Q8N6Q3 437 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms