RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RIG	Q13278	110 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110	KRTAP27-1	Q3LI81	207 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110		Q6JHZ5	121 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110	ARL17A	Q8IVW1	177 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110	ZNF843	Q8N446	348 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110	RNF186	Q9NXI6	227 aa		4.15	□□□□□ -1.75
CD44-231	ENST00000531110		A0A096LNJ9	63 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	IGKV6D-21	A0A0A0MT36	114 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	HIGD1C	A8MV81	97 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110		K7EMI3	77 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	CCL21	O00585	134 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	CDK2AP2	O75956	126 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	HMGN2	P05204	90 aa	Known RBP	4.14	□□□□□ -1.75
CD44-231	ENST00000531110	LMO2	P25791	158 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	SAA4	P35542	130 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	MYCNOS	P40205	109 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	ECSCR	Q19T08	205 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	SP6	Q3SY56	376 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	FAM222A	Q5U5X8	452 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	ZCCHC24	Q8N2G6	241 aa	Known RBP	4.14	□□□□□ -1.75
CD44-231	ENST00000531110	RAB42	Q8N4Z0	105 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110		Q8N7P7	452 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110		Q8N8P6	123 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	THAP8	Q8NA92	274 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	PFN4	Q8NHR9	129 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	C10orf105	Q8TEF2	133 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	PCDH15	Q96QU1	1955 aa		4.14	□□□□□ -1.75
CD44-231	ENST00000531110	EML5	Q05BV3	1969 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	COL18A1	P39060	1754 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	TRBV6-6	A0A0A6YYG2	114 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	IGKV6-21	A0A0C4DH24	114 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	WI2-2373I1.2	A0A1W2PRP0	233 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	UBE2L6	O14933	153 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	EFNA2	O43921	213 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	CCK	P06307	115 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	COX6C	P09669	75 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	ARL14EPL	P0DKL9	152 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	ORMDL2	Q53FV1	153 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	S100A7L2	Q5SY68	101 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	FHL5	Q5TD97	284 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-231	ENST00000531110		Q8N2B8	174 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	C3orf56	Q8N813	242 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	TMEM75	Q8N9X5	138 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	DCTN5	Q9BTE1	182 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	TMEM243	Q9BU79	118 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	RPP21	Q9H633	154 aa	Known RBP	4.13	□□□□□ -1.75
CD44-231	ENST00000531110		Q9H8V8	135 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	RBM12B-AS1	Q9P1G2	102 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	SELENOK	Q9Y6D0	94 aa		4.13	□□□□□ -1.75
CD44-231	ENST00000531110	TRBV7-1	A0A0A6YYK4	115 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	INS-IGF2	F8WCM5	200 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	CCL22	O00626	93 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	ZNF883	P0CG24	379 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	FCER1G	P30273	86 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	KRTAP10-7	P60409	375 aa	Predicted RBP	4.12	□□□□□ -1.75
CD44-231	ENST00000531110	C2orf82	Q6UX34	121 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	WDR86	Q86TI4	376 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	PRAC1	Q96KF2	57 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	AGRN	O00468	2067 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	ATG2B	Q96BY7	2078 aa		4.12	□□□□□ -1.75
CD44-231	ENST00000531110	PCNX3	Q9H6A9	2034 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	IGKV2D-26	A0A0A0MRZ7	120 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	TRAV13-2	A0A0B4J235	113 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	TEX49	A0A1B0GTD5	131 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110		H3BVH4	76 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110		H7BZZ5	65 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110		K7EMT4	169 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	ERC2-IT1	O76042	136 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	IGLV3-1	P01715	115 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110		P0C879	139 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	LPAL2	Q16609	132 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110		Q1T7F1	81 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	C14orf177	Q52M58	125 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	LCE1E	Q5T753	118 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	WFDC11	Q8NEX6	87 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	DCANP1	Q8TF63	244 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	TSACC	Q96A04	125 aa	Predicted RBP	4.11	□□□□□ -1.75
CD44-231	ENST00000531110	CYYR1	Q96J86	154 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	PHPT1	Q9NRX4	125 aa	Predicted RBP	4.11	□□□□□ -1.75
CD44-231	ENST00000531110	TAC3	Q9UHF0	121 aa		4.11	□□□□□ -1.75
CD44-231	ENST00000531110	IGKV3D-15	A0A087WSY6	115 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	IGLV1-36	A0A0B4J1U3	117 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110		A0A1B0GUT8	65 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	IGHV3-33	P01772	117 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	CKS2	P33552	79 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	SNRPD3	P62318	126 aa	Known RBP	4.1	□□□□□ -1.75
CD44-231	ENST00000531110	MDP1	Q86V88	176 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	KRTAP7-1	Q8IUC3	87 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	MKX	Q8IYA7	352 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	ORMDL3	Q8N138	153 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	SLC25A29	Q8N8R3	303 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	EEF1AKMT3	Q96AZ1	226 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	SLC50A1	Q9BRV3	221 aa		4.1	□□□□□ -1.75
CD44-231	ENST00000531110	MRPL35	Q9NZE8	188 aa	Known RBP	4.1	□□□□□ -1.75
CD44-231	ENST00000531110	TRAV7	A0A075B6U4	112 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	IGKV1D-8	A0A087WSZ0	117 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	NDUFAF8	A1L188	74 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1B	A6NDE4	496 aa	Known RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1E	A6NEQ0	496 aa	Known RBP	4.09	□□□□□ -1.75

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