RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 Q6ZQY7 126 aa1.85□□□□□ -2.11
NUP54-215ENST00000514313 TRPM7Q96QT4 1865 aa1.85□□□□□ -2.11
NUP54-215ENST00000514313 CNTRLQ7Z7A1 2325 aa1.85□□□□□ -2.11
NUP54-215ENST00000514313 CTTNBP2Q8WZ74 1663 aa1.84□□□□□ -2.11
NUP54-215ENST00000514313 A0A1W2PPM0 123 aa1.84□□□□□ -2.11
NUP54-215ENST00000514313 CLLU1Q5K131 121 aa1.84□□□□□ -2.11
NUP54-215ENST00000514313 TRBV30A0A0K0K1B3 111 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 IGF2P01344 180 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 SMCO1Q147U7 214 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 Q86TA4 180 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 CCL19Q99731 98 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 SMIM3Q9BZL3 60 aa1.83□□□□□ -2.12
NUP54-215ENST00000514313 KDM5CP41229 1560 aa1.82□□□□□ -2.12
NUP54-215ENST00000514313 WDR97A6NE52 1622 aa1.82□□□□□ -2.12
NUP54-215ENST00000514313 A0A0G2JMM0 328 aa1.82□□□□□ -2.12
NUP54-215ENST00000514313 TPST1O60507 370 aa1.82□□□□□ -2.12
NUP54-215ENST00000514313 HELZP42694 1942 aaKnown RBP1.81□□□□□ -2.12
NUP54-215ENST00000514313 SYNJ1O43426 1573 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 IGLC6P0CF74 106 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 MPC1LP0DKB6 136 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 PRB3Q04118 309 aaPredicted RBP1.81□□□□□ -2.12
NUP54-215ENST00000514313 IQCJQ1A5X6 159 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 SMIM21Q3B7S5 101 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 GLYATL3Q5SZD4 288 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 PTPRGP23470 1445 aa1.81□□□□□ -2.12
NUP54-215ENST00000514313 EVI2AP22794 236 aa1.8□□□□□ -2.12
NUP54-215ENST00000514313 SLC25A26Q70HW3 274 aa1.8□□□□□ -2.12
NUP54-215ENST00000514313 MMGT1Q8N4V1 131 aa1.8□□□□□ -2.12
NUP54-215ENST00000514313 KRTAP4-1Q9BYQ7 146 aa1.8□□□□□ -2.12
NUP54-215ENST00000514313 MRPL35Q9NZE8 188 aaKnown RBP1.8□□□□□ -2.12
NUP54-215ENST00000514313 LSM2Q9Y333 95 aaKnown RBP1.8□□□□□ -2.12
NUP54-215ENST00000514313 CEP152O94986 1710 aa1.8□□□□□ -2.12
NUP54-215ENST00000514313 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
NUP54-215ENST00000514313 RBP4P02753 201 aa1.79□□□□□ -2.12
NUP54-215ENST00000514313 XAF1Q6GPH4 301 aa1.79□□□□□ -2.12
NUP54-215ENST00000514313 KIDINS220Q9ULH0 1771 aa1.79□□□□□ -2.12
NUP54-215ENST00000514313 LOC101927531A0A1B0GV80 90 aa1.78□□□□□ -2.12
NUP54-215ENST00000514313 NCS1P62166 190 aa1.78□□□□□ -2.12
NUP54-215ENST00000514313 UNQ5815/PRO19632Q6UWF5 114 aa1.78□□□□□ -2.12
NUP54-215ENST00000514313 DMAC1Q96GE9 116 aa1.78□□□□□ -2.12
NUP54-215ENST00000514313 M0R2Z0 102 aa1.77□□□□□ -2.13
NUP54-215ENST00000514313 LINC00694P0DN24 101 aa1.77□□□□□ -2.13
NUP54-215ENST00000514313 PRB4P10163 310 aaPredicted RBP1.77□□□□□ -2.13
NUP54-215ENST00000514313 POLR2JP52435 117 aaKnown RBP1.77□□□□□ -2.13
NUP54-215ENST00000514313 SNX29P2Q8IUI4 249 aa1.77□□□□□ -2.13
NUP54-215ENST00000514313 COPZ2Q9P299 210 aa1.77□□□□□ -2.13
NUP54-215ENST00000514313 SPTBP11277 2137 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 OVOS2A0A0J9YW53 1432 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 OVOS2Q6IE36 1432 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 FBN3Q75N90 2809 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 TRAV17A0A0B4J275 112 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 HIGD1CA8MV81 97 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 LINC00208Q96KT6 92 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 ATG5Q9H1Y0 275 aa1.76□□□□□ -2.13
NUP54-215ENST00000514313 NBDYA0A0U1RRE5 68 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 FAM236AA0A1B0GUQ0 79 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 FAM236BA0A1B0GV22 79 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 FXYD3Q14802 87 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 DEFB132Q7Z7B7 95 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 ATP6V0E2Q8NHE4 81 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 TAS2R8Q9NYW2 309 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 NOP16Q9Y3C1 178 aaKnown RBP1.75□□□□□ -2.13
NUP54-215ENST00000514313 CDK5RAP2Q96SN8 1893 aa1.75□□□□□ -2.13
NUP54-215ENST00000514313 LRP5O75197 1615 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 J3QR89 54 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 YPEL1O60688 119 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 TSPAN19P0C672 248 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 CAV3P56539 151 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 ATP11AUNQ6ZP68 121 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 DISP2A7MBM2 1401 aa1.74□□□□□ -2.13
NUP54-215ENST00000514313 TENM1Q9UKZ4 2725 aa1.73□□□□□ -2.13
NUP54-215ENST00000514313 K7EIL1 84 aa1.73□□□□□ -2.13
NUP54-215ENST00000514313 M0R2P5 195 aa1.73□□□□□ -2.13
NUP54-215ENST00000514313 Q6ZS92 163 aa1.73□□□□□ -2.13
NUP54-215ENST00000514313 TSTD1Q8NFU3 115 aa1.73□□□□□ -2.13
NUP54-215ENST00000514313 TFF1P04155 84 aa1.72□□□□□ -2.13
NUP54-215ENST00000514313 CCKP06307 115 aa1.72□□□□□ -2.13
NUP54-215ENST00000514313 CTAGE3PQ8IX95 158 aa1.72□□□□□ -2.13
NUP54-215ENST00000514313 PLAC4Q8WY50 150 aa1.72□□□□□ -2.13
NUP54-215ENST00000514313 TRBV20-1A0A075B6N2 111 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 CXorf51AA0A1B0GTR3 108 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 COX4I1P13073 169 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 ARPC4P59998 168 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 C5orf56Q8N8D9 126 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 DYNLRB2Q8TF09 96 aa1.71□□□□□ -2.14
NUP54-215ENST00000514313 M0R129 80 aa1.7□□□□□ -2.14
NUP54-215ENST00000514313 ATOH7Q8N100 152 aa1.7□□□□□ -2.14
NUP54-215ENST00000514313 PPDPFLQ8WWR9 84 aa1.7□□□□□ -2.14
NUP54-215ENST00000514313 UHRF1BP1LA0JNW5 1464 aa1.69□□□□□ -2.14
NUP54-215ENST00000514313 ZCCHC6Q5VYS8 1495 aaKnown RBP1.69□□□□□ -2.14
NUP54-215ENST00000514313 TRBV10-1A0A0K0K1A3 114 aa1.69□□□□□ -2.14
NUP54-215ENST00000514313 K7ERU9 68 aa1.69□□□□□ -2.14
NUP54-215ENST00000514313 TRAV2A0A0B4J234 112 aa1.68□□□□□ -2.14
NUP54-215ENST00000514313 J3QLW9 94 aa1.67□□□□□ -2.14
NUP54-215ENST00000514313 S100A12P80511 92 aa1.67□□□□□ -2.14
NUP54-215ENST00000514313 ZNF56Q15929 161 aa1.67□□□□□ -2.14
NUP54-215ENST00000514313 ERCC6Q03468 1493 aa1.67□□□□□ -2.14
NUP54-215ENST00000514313 CCDC171Q6TFL3 1326 aa1.66□□□□□ -2.14
NUP54-215ENST00000514313 PRG4Q92954 1404 aaPredicted RBP1.66□□□□□ -2.14
NUP54-215ENST00000514313 SLC25A6P12236 298 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms