RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PEF1Q9UBV8 284 aaKnown RBP9.25□□□□□ -0.93
HDAC6-230ENST00000488543 LEPROTL1O95214 131 aa9.25□□□□□ -0.93
HDAC6-230ENST00000488543 C18orf65Q6ZTR6 163 aa9.25□□□□□ -0.93
HDAC6-230ENST00000488543 MRPL52Q86TS9 123 aaKnown RBP9.25□□□□□ -0.93
HDAC6-230ENST00000488543 C11orf44Q8N8P7 122 aa9.25□□□□□ -0.93
HDAC6-230ENST00000488543 PSG8Q9UQ74 426 aa9.25□□□□□ -0.93
HDAC6-230ENST00000488543 ZFP30Q9Y2G7 519 aa9.25□□□□□ -0.93
HDAC6-230ENST00000488543 SYS1-DBNDD2H3BUS1 97 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 CRLF1O75462 422 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 LINC00614P0C842 121 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 TCTEX1D4Q5JR98 221 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 IGKV2-40A0A087WW87 121 aaPredicted RBP9.24□□□□□ -0.93
HDAC6-230ENST00000488543 TRAV8-2A0A0B4J237 113 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 LOC389332A0A1B0GUA5 103 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 SNAI2O43623 268 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 IGKV2D-40P01614 121 aaPredicted RBP9.24□□□□□ -0.93
HDAC6-230ENST00000488543 ELANEP08246 267 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 C4orf48Q5BLP8 95 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 LINC01006Q8NI28 216 aa9.24□□□□□ -0.93
HDAC6-230ENST00000488543 NPIPB6E9PJ23 425 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 NCR2O95944 276 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 TMEM213A2RRL7 107 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 K7EQM0 130 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 HAX1O00165 279 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 CCL25O15444 150 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 CSN1S1P47710 185 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 GAGE1Q13065 139 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 Q8TAT8 98 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 SLC50A1Q9BRV3 221 aa9.23□□□□□ -0.93
HDAC6-230ENST00000488543 MPV17L2Q567V2 206 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 CT83Q5H943 113 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 C8orf86Q6ZUL3 223 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 RNF182Q8N6D2 247 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 PRAC2D3DTV9 90 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 EDN2P20800 178 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 GPHB5Q86YW7 130 aa9.22□□□□□ -0.93
HDAC6-230ENST00000488543 IGHV7-4-1A0A0J9YVY3 117 aa9.21□□□□□ -0.93
HDAC6-230ENST00000488543 A0A1B0GUT8 65 aa9.21□□□□□ -0.93
HDAC6-230ENST00000488543 SMKR1H3BMG3 65 aa9.21□□□□□ -0.93
HDAC6-230ENST00000488543 LGALS1P09382 135 aaKnown RBP9.21□□□□□ -0.93
HDAC6-230ENST00000488543 VGLL1Q99990 258 aa9.21□□□□□ -0.93
HDAC6-230ENST00000488543 SELENOKQ9Y6D0 94 aa9.21□□□□□ -0.93
HDAC6-230ENST00000488543 DEFB136Q30KP8 78 aa9.21□□□□□ -0.94
HDAC6-230ENST00000488543 GFRA4Q9GZZ7 299 aa9.21□□□□□ -0.94
HDAC6-230ENST00000488543 K7EMT4 169 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 KHDC1LQ5JSQ8 128 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 UBE2E2Q96LR5 201 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 DUX3Q96PT4 197 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 SMPXQ9UHP9 88 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 MRPS16Q9Y3D3 137 aaKnown RBP9.2□□□□□ -0.94
HDAC6-230ENST00000488543 SOCS3O14543 225 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 IFI27P40305 119 aaPredicted RBP9.2□□□□□ -0.94
HDAC6-230ENST00000488543 PTTG1IPP53801 180 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 LYZL1Q6UWQ5 148 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 COX8CQ7Z4L0 72 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 AMN1Q8IY45 258 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 CHCHD1Q96BP2 118 aaKnown RBP9.2□□□□□ -0.94
HDAC6-230ENST00000488543 MRPL53Q96EL3 112 aaKnown RBP9.2□□□□□ -0.94
HDAC6-230ENST00000488543 NDFIP1Q9BT67 221 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 DAZ1Q9NQZ3 744 aaKnown RBP9.2□□□□□ -0.94
HDAC6-230ENST00000488543 TENM1Q9UKZ4 2725 aa9.2□□□□□ -0.94
HDAC6-230ENST00000488543 IGHV4OR15-8A0A075B7B6 117 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 A0A087WW49 117 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 CD28P10747 220 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 WFDC3Q8IUB2 231 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 C20orf173Q96LM9 149 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 JMJD8Q96S16 334 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 RHPN1-AS1Q9BWJ2 59 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 WNK1Q9H4A3 2382 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 FBLL1A6NHQ2 334 aaKnown RBP9.19□□□□□ -0.94
HDAC6-230ENST00000488543 D6R8Y8 96 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 NUDT3O95989 172 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 OR8A1Q8NGG7 326 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 PRR25Q96S07 402 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 C16orf95Q9H693 158 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 COX11Q9Y6N1 276 aa9.19□□□□□ -0.94
HDAC6-230ENST00000488543 ATRQ13535 2644 aa9.18□□□□□ -0.94
HDAC6-230ENST00000488543 C20orf202A1L168 122 aa9.18□□□□□ -0.94
HDAC6-230ENST00000488543 SH2D1AO60880 128 aa9.18□□□□□ -0.94
HDAC6-230ENST00000488543 ZNF80P51504 273 aaPredicted RBP9.18□□□□□ -0.94
HDAC6-230ENST00000488543 ERCC8Q13216 396 aa9.18□□□□□ -0.94
HDAC6-230ENST00000488543 MAP1LC3CQ9BXW4 147 aa9.18□□□□□ -0.94
HDAC6-230ENST00000488543 A0A1W2PRX2 142 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 RBAKDNA6NC62 111 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 CBY3A6NI87 242 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 CRXO43186 299 aaPredicted RBP9.17□□□□□ -0.94
HDAC6-230ENST00000488543 PRSS3P2Q8NHM4 247 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 A0A096LNJ9 63 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 GAS8-AS1O95177 125 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 OR5AL1P0C617 328 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 RIGQ13278 110 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 RNASE8Q8TDE3 154 aaKnown RBP9.17□□□□□ -0.94
HDAC6-230ENST00000488543 C16orf92Q96LL3 132 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 TMEM191AQ9H0A3 160 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 AP5S1Q9NUS5 200 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 UFC1Q9Y3C8 167 aa9.17□□□□□ -0.94
HDAC6-230ENST00000488543 SAPCD1Q5SSQ6 148 aa9.16□□□□□ -0.94
HDAC6-230ENST00000488543 FA2HQ7L5A8 372 aa9.16□□□□□ -0.94
HDAC6-230ENST00000488543 MSRB1Q9NZV6 116 aa9.16□□□□□ -0.94
HDAC6-230ENST00000488543 AGPAT4-IT1Q9H0P7 198 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms