RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 DAZ1Q9NQZ3 744 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 NIPBLQ6KC79 2804 aaeCLIP10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 CLPSL1A2RUU4 121 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 SRSF1Q07955 248 aaKnown RBP eCLIP10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 PDE6HQ13956 83 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 SIGLEC8Q9NYZ4 499 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 SETXQ7Z333 2677 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 K7EMI3 77 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 RIPPLY3P57055 190 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 SPATA12Q7Z6I5 190 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 KLHL30-AS1Q8NEE0 82 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 MAP1LC3AQ9H492 121 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 ZNF492Q9P255 531 aa10.5□□□□□ -0.73
CCDC88A-211ENST00000471947 A0A087X0K7 114 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 NDUFS8O00217 210 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 NUDT3O95989 172 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 SCGB2A2Q13296 93 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 EBI3Q14213 229 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 LYPD1Q8N2G4 141 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 FOXC2Q99958 501 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 VAMP3Q15836 100 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 PRR9Q5T870 116 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 ATP5L2Q7Z4Y8 100 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 UBE2E2Q96LR5 201 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 SMR3AQ99954 134 aa10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 FBLL1A6NHQ2 334 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-211ENST00000471947 TRAV8-6A0A0B4J262 113 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 SYS1-DBNDD2H3BUS1 97 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 NSUN5P1Q3KNT7 163 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 FAM104BQ5XKR9 115 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 OR11H1Q8NG94 326 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 HSPB8Q9UJY1 196 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 IGHV4OR15-8A0A075B7B6 117 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 A0A087WW49 117 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 IGKV3D-20A0A0C4DH25 116 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 MRPS12O15235 138 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 DEFB131AP59861 70 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 ZNF56Q15929 161 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 MIEN1Q9BRT3 115 aa10.48□□□□□ -0.73
CCDC88A-211ENST00000471947 APRG1Q8IVJ8 170 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 LINC00469Q8N7U9 141 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 UQCR10Q9UDW1 63 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 A6NDX4 124 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 ASIPP42127 132 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 GOLT1BQ9Y3E0 138 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 TRAV8-2A0A0B4J237 113 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 TMEM8BA6NDV4 472 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 IGHG2P01859 326 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 SLC25A16P16260 332 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 ID1P41134 155 aa10.47□□□□□ -0.73
CCDC88A-211ENST00000471947 A0A1B0GXF2 115 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 FAM223BA6NKX1 122 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 IGHG4P01861 327 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 DEFB113Q30KQ7 82 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 FAM223AQ8IWN6 122 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 TMEM158Q8WZ71 300 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 TNFRSF6BO95407 300 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 HOXD3P31249 432 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 TCTEX1D4Q5JR98 221 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 RPL39LQ96EH5 51 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 URB1-AS1Q96HZ7 61 aa10.46□□□□□ -0.73
CCDC88A-211ENST00000471947 MPV17L2Q567V2 206 aa10.46□□□□□ -0.74
CCDC88A-211ENST00000471947 M0QZK8 103 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 SNRPD3P62318 126 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 SFTA2Q6UW10 78 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 DKK2Q9UBU2 259 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 NBPF19A0A087WUL8 3843 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 IGHV7-4-1A0A0J9YVY3 117 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 GTSCR1Q86UQ5 136 aa10.45□□□□□ -0.74
CCDC88A-211ENST00000471947 TRAV9-2A0A087WT02 112 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 TCF21O43680 179 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 C9orf139Q6ZV77 190 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 LAMTOR2Q9Y2Q5 125 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 IGHV3-16A0A0C4DH30 117 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 AP1S3Q96PC3 154 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 IGHV3-64A0A075B6Q5 118 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 IGHV3-53P01767 116 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 IFI27L1Q96BM0 104 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 USMG5Q96IX5 58 aa10.44□□□□□ -0.74
CCDC88A-211ENST00000471947 MAST4O15021 2626 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 NDUFA4O00483 81 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 RPS20P60866 119 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 ZC2HC1BQ5TFG8 222 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 XCL2Q9UBD3 114 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 SMPXQ9UHP9 88 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 TRAV21A0A0B4J279 112 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 SLC25A34Q6PIV7 304 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 ZNF48Q96MX3 618 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 SPOCK3Q9BQ16 436 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 MS4A6AQ9H2W1 248 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 JMJD8Q96S16 334 aa10.43□□□□□ -0.74
CCDC88A-211ENST00000471947 IGLC3P0DOY3 106 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 IGHV4-31P0DP07 118 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 TSPOP30536 169 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 CT83Q5H943 113 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 C16orf54Q6UWD8 224 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 MYOZ3Q8TDC0 251 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 VPREB3Q9UKI3 123 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 HBDP02042 147 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 TMEM190Q8WZ59 177 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms