RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 CMC4P56277 68 aaPredicted RBP6.96□□□□□ -1.3
VPS52-216ENST00000471309 RIGQ13278 110 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 CLUHP3Q96NS8 147 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 FAM110AQ9BQ89 295 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 TPPP3Q9BW30 176 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 CNFNQ9BYD5 112 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 DNHD1Q96M86 4753 aa6.96□□□□□ -1.3
VPS52-216ENST00000471309 GRIFINA4D1Z8 144 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 C5orf52A6NGY3 159 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 KNCNA6PVL3 124 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 F2Z2F3 143 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 H3BMM0 161 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 J3KRW8 73 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 ARMS2P0C7Q2 107 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 CAMPP49913 170 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 RAB4BP61018 213 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 KIR3DS1Q14943 382 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 KRTAP24-1Q3LI83 254 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 GFI1BQ5VTD9 330 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 LYZL1Q6UWQ5 148 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 Q6ZQT7 251 aa6.95□□□□□ -1.3
VPS52-216ENST00000471309 OR11H12B2RN74 326 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 IGKV3-20P01619 116 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 APCSP02743 223 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 OR5AL1P0C617 328 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 MED14OSP0DP75 135 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 INSL3P51460 131 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 SNRPEP62304 92 aaKnown RBP6.94□□□□□ -1.3
VPS52-216ENST00000471309 SLAQ13239 276 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 SPINK13Q1W4C9 94 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 BEAN1Q3B7T3 259 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 ANXA2RQ3ZCQ2 193 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 COA6Q5JTJ3 125 aaKnown RBP6.94□□□□□ -1.3
VPS52-216ENST00000471309 DNLZQ5SXM8 178 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 KCNS1Q96KK3 526 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 SSBP4Q9BWG4 385 aaPredicted RBP6.94□□□□□ -1.3
VPS52-216ENST00000471309 NAGKQ9UJ70 344 aa6.94□□□□□ -1.3
VPS52-216ENST00000471309 TRAV12-3A0A0B4J271 114 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 RBMY1BA6NDE4 496 aaKnown RBP6.93□□□□□ -1.3
VPS52-216ENST00000471309 RBMY1EA6NEQ0 496 aaKnown RBP6.93□□□□□ -1.3
VPS52-216ENST00000471309 M0R2Z0 102 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 UBE2CO00762 179 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 SNAI2O43623 268 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 ZNF324O75467 553 aaPredicted RBP6.93□□□□□ -1.3
VPS52-216ENST00000471309 RBMY1DP0C7P1 496 aaKnown RBP6.93□□□□□ -1.3
VPS52-216ENST00000471309 ASIPP42127 132 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 NDUFA6P56556 154 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 ZNF124Q15973 351 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 TDRG1Q3Y452 100 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 OXLD1Q5BKU9 147 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 C9orf66Q5T8R8 295 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 FAM159AQ6UWV7 190 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 ZNF493Q6ZR52 646 aa6.93□□□□□ -1.3
VPS52-216ENST00000471309 IGHV4-4A0A075B6R2 117 aa6.92□□□□□ -1.3
VPS52-216ENST00000471309 TRAV12-2A0A075B6T6 113 aa6.92□□□□□ -1.3
VPS52-216ENST00000471309 CRXO43186 299 aaPredicted RBP6.92□□□□□ -1.3
VPS52-216ENST00000471309 CACNG7P62955 275 aa6.92□□□□□ -1.3
VPS52-216ENST00000471309 MUC21Q5SSG8 566 aa6.92□□□□□ -1.3
VPS52-216ENST00000471309 TRPT1Q86TN4 253 aaKnown RBP6.92□□□□□ -1.3
VPS52-216ENST00000471309 MCRIP2Q9BUT9 160 aaKnown RBP6.92□□□□□ -1.3
VPS52-216ENST00000471309 ZNF747Q9BV97 191 aa6.92□□□□□ -1.3
VPS52-216ENST00000471309 LOC102724200A0A096LPH7 203 aaPredicted RBP6.91□□□□□ -1.3
VPS52-216ENST00000471309 H3BVH4 76 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 AMBPP02760 352 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 HOXA5P20719 270 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 SRIP30626 198 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 TWIST1Q15672 202 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 OR10J3Q5JRS4 329 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 PRIMA1Q86XR5 153 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 STHQ8IWL8 128 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 C20orf144Q9BQM9 153 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 SCRT2Q9NQ03 307 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 C19orf73Q9NVV2 129 aa6.91□□□□□ -1.3
VPS52-216ENST00000471309 IGHV1OR15-1A0A075B7D0 117 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 NXPH4O95158 308 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 INSP01308 110 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 CD7P09564 240 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 NTF3P20783 257 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 S100A4P26447 101 aaKnown RBP6.9□□□□□ -1.3
VPS52-216ENST00000471309 Q0VG73 95 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 KIAA1644Q3SXP7 199 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 WFDC9Q8NEX5 89 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 OR10AG1Q8NH19 301 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 LINC00467Q9BRT7 94 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 ALKBH7Q9BT30 221 aaPredicted RBP6.9□□□□□ -1.3
VPS52-216ENST00000471309 TMEM191AQ9H0A3 160 aa6.9□□□□□ -1.3
VPS52-216ENST00000471309 TRGV11A0A075B6L2 103 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 IGHV3-16A0A0C4DH30 117 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 MUC21A0A0G2JKD1 596 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 MUC21A0A140T8X8 626 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 WIPF1O43516 503 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 GNRH2O43555 120 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 RBMY1A1P0DJD3 496 aaKnown RBP6.89□□□□□ -1.31
VPS52-216ENST00000471309 RBMY1CP0DJD4 496 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 RNASE3P12724 160 aaKnown RBP6.89□□□□□ -1.31
VPS52-216ENST00000471309 FXYD7P58549 80 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 NUTF2P61970 127 aaKnown RBP6.89□□□□□ -1.31
VPS52-216ENST00000471309 RBMY1FQ15415 496 aaKnown RBP6.89□□□□□ -1.31
VPS52-216ENST00000471309 SPANXN1Q5VSR9 72 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 FAM104BQ5XKR9 115 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms