RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 PRR31Q5SQ13 230 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 LYRM9A8MSI8 78 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 C14orf178Q8N769 122 aaPredicted RBP3.83□□□□□ -1.8
PCDH9-201ENST00000377861 PHLDA1Q8WV24 401 aaPredicted RBP3.83□□□□□ -1.8
PCDH9-201ENST00000377861 TRAV8-1A0A0A6YYK1 113 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 APOC4P55056 127 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 PRIMA1Q86XR5 153 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 TRAV5A0A0B4J249 113 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 PATE3B3GLJ2 98 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 B5MCH6 92 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 NEXN-AS1Q8NBZ9 246 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 MYO9AB2RTY4 2548 aa3.83□□□□□ -1.8
PCDH9-201ENST00000377861 SDK2Q58EX2 2172 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 FAM219BQ5XKK7 198 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 CHCHD7Q9BUK0 85 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 ZNF80P51504 273 aaPredicted RBP3.82□□□□□ -1.8
PCDH9-201ENST00000377861 DUX5Q96PT3 197 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 SNRPCP09234 159 aaKnown RBP3.82□□□□□ -1.8
PCDH9-201ENST00000377861 POM121L12Q8N7R1 296 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 IGHV3-64DA0A0J9YX35 117 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 ZNF295-AS1Q8N0V1 137 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 LEAP2Q969E1 77 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 TRBV6-4A0A1B0GX49 114 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 RBX1P62877 108 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 CCL19Q99731 98 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 METRNQ9UJH8 293 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 FANCD2OSQ96PS1 177 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 DSCR8Q96T75 97 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 TRGV2A0A075B6R0 118 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 IGLV2-11P01706 119 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 FAM215AQ9Y5M1 114 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 IGHV3OR16-10A0A075B7F0 116 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 hADV29S1A0JD25 119 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 TMEM213A2RRL7 107 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 MGPP08493 103 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 PATJQ8NI35 1801 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 TMEM258P61165 79 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 CDPF1Q6NVV7 123 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 APRG1Q8IVJ8 170 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 hDV102S1A0JD36 115 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 NXPH4O95158 308 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 POLR2KP53803 58 aaKnown RBP3.82□□□□□ -1.8
PCDH9-201ENST00000377861 UBE2WQ96B02 151 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 COL11A1P12107 1806 aaPredicted RBP3.82□□□□□ -1.8
PCDH9-201ENST00000377861 PRO3102Q9H379 93 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 PLXNA4Q9HCM2 1894 aa3.82□□□□□ -1.8
PCDH9-201ENST00000377861 MDC1Q14676 2089 aaKnown RBP3.82□□□□□ -1.8
PCDH9-201ENST00000377861 IGHV3-72A0A0B4J1Y9 119 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 ARID2Q68CP9 1835 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 C18orf15Q96N68 181 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 BAALC-AS2P0C853 105 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 FNDC1Q4ZHG4 1894 aaPredicted RBP3.81□□□□□ -1.8
PCDH9-201ENST00000377861 TMSB15BA0A087X1C1 80 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 C9JAW5 83 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 EMP1P54849 157 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 FGF6P10767 208 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 CACNA1BQ00975 2339 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 COLQQ9Y215 455 aaPredicted RBP3.81□□□□□ -1.8
PCDH9-201ENST00000377861 ICE1Q9Y2F5 2266 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 RITA1Q96K30 269 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 IGHV7-81A0A0B4J1V7 117 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 CD28P10747 220 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 Q8N1Y9 231 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 TMEM105Q8N8V8 129 aa3.81□□□□□ -1.8
PCDH9-201ENST00000377861 TRIP12Q14669 1992 aaPredicted RBP3.81□□□□□ -1.8
PCDH9-201ENST00000377861 GAGE2AQ6NT46 116 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 LINC00173Q6ZV60 143 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 TSPAN13O95857 204 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 Q8NA96 180 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 SPAARA0A1B0GVQ0 90 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 C10orf105Q8TEF2 133 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 NAV2Q8IVL1 2488 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 ACACAQ13085 2346 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 DNAJC13O75165 2243 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 IGKV1D-37A0A075B6S9 117 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 PSMG3-AS1Q96PY0 264 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 ZNF22P17026 224 aaPredicted RBP3.8□□□□□ -1.8
PCDH9-201ENST00000377861 RPL37AP8A6NKH3 93 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 Q8N6K4 173 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 CRLF1O75462 422 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 IGHV3-53P01767 116 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 ANKRD36A6QL64 1941 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 HEATR5BQ9P2D3 2071 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 ROS1P08922 2347 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 ASXL3Q9C0F0 2248 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 IGKV2D-26A0A0A0MRZ7 120 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 TGFAP01135 160 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 TANC1Q9C0D5 1861 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 UFSP1Q6NVU6 142 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 TP53TG1Q9Y2A0 90 aa3.8□□□□□ -1.8
PCDH9-201ENST00000377861 CGB1A6NKQ9 187 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 GNG5P63218 68 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 SVIPQ8NHG7 77 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 TFPI2P48307 235 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 TMEM219Q86XT9 240 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 RNF144BQ7Z419 303 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 MIAQ16674 131 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 C16orf74Q96GX8 76 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 KLLNB2CW77 178 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 IGIPA6NJ69 53 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms