RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NDUFS8O00217 210 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 OR7C2O60412 319 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 SPINK4O60575 86 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 S100A6P06703 90 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 GPX1P07203 203 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 CT45A10P0DMU9 189 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ORM2P19652 201 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 CBLN1P23435 193 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 HTR1DP28221 377 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 GPR6P46095 362 aaPredicted RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 TNXAQ16473 311 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 PDZD11Q5EBL8 140 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 C9orf47Q6ZRZ4 202 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 KLHDC1Q8N7A1 406 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 TSKUQ8WUA8 353 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ARPC1AQ92747 370 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ATG101Q9BSB4 218 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 RAB1BQ9H0U4 201 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 SAV1Q9H4B6 383 aaPredicted RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 BIN3Q9NQY0 253 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 OTORQ9NRC9 128 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 IGKV3-7A0A075B6H7 116 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 FAM231BA6NCW3 169 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ZNF705FA8MVS1 300 aaPredicted RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 M0R3E3 92 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 APOA2P02652 100 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 RPS10P46783 165 aaKnown RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 FXYD3Q14802 87 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ADIRFQ15847 76 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 C10orf113Q5VZT2 155 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 Q6AWC8 147 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 LRRC75A-AS1Q8N1F1 130 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 FMC1Q96HJ9 113 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 IGHV4-28A0A0C4DH34 117 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 IGLV5-39A0A0G2JS06 123 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 PLAC8L1A1L4L8 177 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 TMEM213A2RRL7 107 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 PPP5D1E7EU14 171 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 NCR2O95944 276 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 IGHV3-23P01764 117 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 NBEAP1P0C6P0 100 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 RNASE3P12724 160 aaKnown RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 PRRX1P54821 245 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 ATP5J2P56134 94 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 DEFB1P60022 68 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 RPL19P84098 196 aaKnown RBP1.69□□□□□ -2.14
VPS54-202ENST00000354504 MAJINQ3KP22 176 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 OR10J3Q5JRS4 329 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 BRD3OSQ6XYD6 125 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 OR2T10Q8NGZ9 312 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 DUX5Q96PT3 197 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 NDFIP1Q9BT67 221 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 PAXXQ9BUH6 204 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 TMEM167BQ9NRX6 74 aa1.69□□□□□ -2.14
VPS54-202ENST00000354504 IGHV3-49A0A0A0MS15 119 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 PGPA6NDG6 321 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 CYSRT1A8MQ03 144 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 H3BUA1 57 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 SERF1AO75920 110 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 TSHBP01222 138 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 HIST1H1EP10412 219 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 CRISP2P16562 243 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 RAB4AP20338 218 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 HOXD3P31249 432 aaPredicted RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 SLC35B1P78383 322 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 S100A12P80511 92 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 ERHP84090 104 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 RAB31Q13636 194 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 LY6EQ16553 131 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 PRR27Q6MZM9 219 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 C2orf91Q6ZV80 131 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 BLNKQ8WV28 456 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 NOL4LQ96MY1 436 aaPredicted RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 MS4A10Q96PG2 267 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 EDA2RQ9HAV5 297 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 PITPNC1Q9UKF7 332 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 ZNF256Q9Y2P7 627 aaPredicted RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 TIMM8BQ9Y5J9 83 aaPredicted RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 F8P00451 2351 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 IGHV1-24A0A0C4DH33 117 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 GRIFINA4D1Z8 144 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 HELTA6NFD8 242 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 OR2T8A6NH00 312 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 ARMS2P0C7Q2 107 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 SFTPCP11686 197 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 RANP62826 216 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 VMA21Q3ZAQ7 101 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 ATP5L2Q7Z4Y8 100 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 RNF182Q8N6D2 247 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 NANPQ8TBE9 248 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 MRPL53Q96EL3 112 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 C18orf15Q96N68 181 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 GPR82Q96P67 336 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 OR5B12Q96R08 314 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 AMELXQ99217 191 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 RNF2Q99496 336 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 HHLA3Q9XRX5 114 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 COL6A5A8TX70 2615 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 NBEAL2Q6ZNJ1 2754 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 LOC102724200A0A096LPH7 203 aaPredicted RBP1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms