RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 C8orf86Q6ZUL3 223 aa10.69□□□□□ -0.7
SYNE3-201ENST00000334258 RNASE6Q93091 150 aaKnown RBP10.69□□□□□ -0.7
SYNE3-201ENST00000334258 YAE1D1Q9NRH1 226 aa10.69□□□□□ -0.7
SYNE3-201ENST00000334258 ERG28Q9UKR5 140 aa10.69□□□□□ -0.7
SYNE3-201ENST00000334258 NCBP2LA6PVI3 153 aaKnown RBP10.68□□□□□ -0.7
SYNE3-201ENST00000334258 SHISA9B4DS77 424 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 IGLC6P0CF74 106 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 ERCC8Q13216 396 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 ONECUT1Q9UBC0 465 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 MSRB2Q9Y3D2 182 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 DTX2Q86UW9 622 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 PIFOQ8TCI5 191 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 ZMAT4Q9H898 229 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 KLK15Q9H2R5 256 aa10.68□□□□□ -0.7
SYNE3-201ENST00000334258 B9A039 149 aa10.67□□□□□ -0.7
SYNE3-201ENST00000334258 SFTA2Q6UW10 78 aa10.67□□□□□ -0.7
SYNE3-201ENST00000334258 ZNF462Q96JM2 2506 aa10.67□□□□□ -0.7
SYNE3-201ENST00000334258 TRAV26-2A0A0B4J265 109 aa10.67□□□□□ -0.7
SYNE3-201ENST00000334258 C21orf62Q9NYP8 219 aa10.67□□□□□ -0.7
SYNE3-201ENST00000334258 C1QTNF4Q9BXJ3 329 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 TNFRSF13BO14836 293 aaPredicted RBP10.66□□□□□ -0.7
SYNE3-201ENST00000334258 EFNA4P52798 201 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 Q8N8P6 123 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 SYT8Q8NBV8 401 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 KAAG1Q9UBP8 84 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 NBR2O15453 112 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 LY6HO94772 140 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 CYSLTR1Q9Y271 337 aa10.66□□□□□ -0.7
SYNE3-201ENST00000334258 LAGE3Q14657 143 aa10.65□□□□□ -0.7
SYNE3-201ENST00000334258 APOMO95445 188 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 SRSF1Q07955 248 aaKnown RBP eCLIP10.64□□□□□ -0.71
SYNE3-201ENST00000334258 RRN3P1Q2M238 152 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 DYNAPQ8N1N2 210 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 IGHV3OR16-13A0A075B7E8 117 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 IGHV3-74A0A0B4J1X5 117 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 CCL21O00585 134 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 TRGV3P03979 118 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 THBDP07204 575 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 LINC01559Q495D7 138 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 IGHV3-66A0A0C4DH42 116 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 RNF182Q8N6D2 247 aa10.64□□□□□ -0.71
SYNE3-201ENST00000334258 SPANXN1Q5VSR9 72 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 IL17RELQ6ZVW7 336 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 USP9YO00507 2555 aaPredicted RBP10.63□□□□□ -0.71
SYNE3-201ENST00000334258 USP24Q9UPU5 2620 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 LOC107984156A0A0G2JMH3 177 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 PRAC2D3DTV9 90 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 M0QXV9 152 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 ARL17AQ8IVW1 177 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 FANCD2OSQ96PS1 177 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 RNF5Q99942 180 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 ABCA12Q86UK0 2595 aa10.63□□□□□ -0.71
SYNE3-201ENST00000334258 XGP55808 180 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 TAL2Q16559 108 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 CFHR4Q92496 578 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 A0A087WX48 190 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 HOXA3O43365 443 aaPredicted RBP10.62□□□□□ -0.71
SYNE3-201ENST00000334258 SCGB1D4Q6XE38 83 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 ZNF502Q8TBZ5 544 aa10.62□□□□□ -0.71
SYNE3-201ENST00000334258 PLNP26678 52 aa10.61□□□□□ -0.71
SYNE3-201ENST00000334258 GLMPQ8WWB7 406 aa10.61□□□□□ -0.71
SYNE3-201ENST00000334258 DPM3Q9P2X0 92 aa10.61□□□□□ -0.71
SYNE3-201ENST00000334258 SMAD5-AS1Q9Y6J3 95 aa10.61□□□□□ -0.71
SYNE3-201ENST00000334258 SRSF9Q13242 221 aaKnown RBP eCLIP10.61□□□□□ -0.71
SYNE3-201ENST00000334258 PPDPFQ9H3Y8 114 aa10.61□□□□□ -0.71
SYNE3-201ENST00000334258 COX8CQ7Z4L0 72 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 IGLV11-55A0A075B6I3 123 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 TRBV20-1A0A075B6N2 111 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 IGHV3-49A0A0A0MS15 119 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 E7EQL1 145 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 ZNF575Q86XF7 245 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 SCGB3A1Q96QR1 104 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 CNFNQ9BYD5 112 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 CDIP1Q9H305 208 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 CUBNO60494 3623 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 MYMXA0A1B0GTQ4 84 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 IGHG4P01861 327 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 PRTN3P24158 256 aa10.6□□□□□ -0.71
SYNE3-201ENST00000334258 IGKV3D-20A0A0C4DH25 116 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 PRSS29PA6NIE9 313 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 CCDC179H3BU77 68 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 H7C1H1 209 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 PSMB2P49721 201 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 VKORC1Q9BQB6 163 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 KLRD1Q13241 179 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 Q6ZUT4 128 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 F8VRH5 84 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 F8W735 103 aaPredicted RBP10.59□□□□□ -0.71
SYNE3-201ENST00000334258 CTSGP08311 255 aa10.59□□□□□ -0.71
SYNE3-201ENST00000334258 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.58□□□□□ -0.723e-6■■■■□ 26.2
SYNE3-201ENST00000334258 IGLV2-18A0A075B6J9 118 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 LINC01546A6NGU7 62 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 FHL3Q13643 280 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 TMEM78Q5T7P6 136 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 C3orf56Q8N813 242 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.58□□□□□ -0.72
SYNE3-201ENST00000334258 LINC01549A6NIU2 74 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 HLA-DRB4P13762 266 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 C11orf21Q9P2W6 132 aa10.58□□□□□ -0.72
SYNE3-201ENST00000334258 HLA-DRB4X5D2U9 266 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms