RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 C11orf21Q9P2W6 132 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 C2orf70A6NJV1 201 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 J3KRW8 73 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 CTRLP40313 264 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 SRD5A1P18405 259 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 BTF3P20290 206 aaKnown RBP12.42□□□□□ -0.42
COL4A1-204ENST00000543140 DEFB113Q30KQ7 82 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 FAM104BQ5XKR9 115 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 C9orf47Q6ZRZ4 202 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 C9orf139Q6ZV77 190 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 MRPL53Q96EL3 112 aaKnown RBP12.42□□□□□ -0.42
COL4A1-204ENST00000543140 RHPN1-AS1Q9BWJ2 59 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 IGKV3D-20A0A0C4DH25 116 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 FOXE3Q13461 319 aa12.42□□□□□ -0.42
COL4A1-204ENST00000543140 PEF1Q9UBV8 284 aaKnown RBP12.42□□□□□ -0.42
COL4A1-204ENST00000543140 LOC389332A0A1B0GUA5 103 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 PSMB8P28062 276 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 MAJINQ3KP22 176 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 ZNF705AQ6ZN79 300 aaPredicted RBP12.41□□□□□ -0.42
COL4A1-204ENST00000543140 SPATA12Q7Z6I5 190 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 PSMG3-AS1Q96PY0 264 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 C20orf144Q9BQM9 153 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 TCAPO15273 167 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 LINC01559Q495D7 138 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 CYB5R2Q6BCY4 276 aa12.41□□□□□ -0.42
COL4A1-204ENST00000543140 SMKR1H3BMG3 65 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 LEPROTL1O95214 131 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 MRPL51Q4U2R6 128 aaKnown RBP12.4□□□□□ -0.42
COL4A1-204ENST00000543140 SPATA45Q537H7 98 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 PRSS3P2Q8NHM4 247 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 DAZ1Q9NQZ3 744 aaKnown RBP12.4□□□□□ -0.42
COL4A1-204ENST00000543140 BEX4Q9NWD9 120 aaPredicted RBP12.4□□□□□ -0.42
COL4A1-204ENST00000543140 PRRC2AP48634 2157 aaKnown RBP12.4□□□□□ -0.42
COL4A1-204ENST00000543140 IGHV7-4-1A0A0J9YVY3 117 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 Q96MF0 132 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 PRELID3AQ96N28 172 aa12.4□□□□□ -0.42
COL4A1-204ENST00000543140 CHD6Q8TD26 2715 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 F6UB75 175 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 SOCS3O14543 225 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 IFI27P40305 119 aaPredicted RBP12.39□□□□□ -0.43
COL4A1-204ENST00000543140 NUTF2P61970 127 aaKnown RBP12.39□□□□□ -0.43
COL4A1-204ENST00000543140 SRSF2Q01130 221 aaKnown RBP12.39□□□□□ -0.43
COL4A1-204ENST00000543140 FAM106AQ4KMX7 169 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 PRR9Q5T870 116 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 TENM4Q6N022 2769 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 NCR2O95944 276 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 RPLP1P05386 114 aaKnown RBP12.39□□□□□ -0.43
COL4A1-204ENST00000543140 HIST1H1AQ02539 215 aaPredicted RBP12.39□□□□□ -0.43
COL4A1-204ENST00000543140 DUX5Q96PT3 197 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 TMEM70Q9BUB7 260 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 AP5S1Q9NUS5 200 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 VPREB3Q9UKI3 123 aa12.39□□□□□ -0.43
COL4A1-204ENST00000543140 ORMDL3Q8N138 153 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 MIEN1Q9BRT3 115 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 CCDC168Q8NDH2 2452 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 H0Y8G0 127 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 HOXA3O43365 443 aaPredicted RBP12.38□□□□□ -0.43
COL4A1-204ENST00000543140 FA2HQ7L5A8 372 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 OR10J6PQ8NGY7 276 aa12.38□□□□□ -0.43
COL4A1-204ENST00000543140 CKS2P33552 79 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 Q6YL49 198 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 MCRIP2Q9BUT9 160 aaKnown RBP12.37□□□□□ -0.43
COL4A1-204ENST00000543140 SMPXQ9UHP9 88 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 SONP18583 2426 aaKnown RBP12.37□□□□□ -0.43
COL4A1-204ENST00000543140 MYO9AB2RTY4 2548 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 FSHBP01225 129 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 BATFQ16520 125 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 SIGLEC8Q9NYZ4 499 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 U3KQK5 164 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 ITPR3Q14573 2671 aa12.37□□□□□ -0.43
COL4A1-204ENST00000543140 HIST2H2BCQ6DN03 193 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 WFDC3Q8IUB2 231 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 OR10AG1Q8NH19 301 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 NBPF19A0A087WUL8 3843 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 SYS1-DBNDD2H3BUS1 97 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 GAS8-AS1O95177 125 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 PRSS57Q6UWY2 283 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 CNFNQ9BYD5 112 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 TMEM191AQ9H0A3 160 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 ZNF580Q9UK33 172 aa12.36□□□□□ -0.43
COL4A1-204ENST00000543140 NPYP01303 97 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 FXYD7P58549 80 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 OVOL1O14753 267 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 OR5AL1P0C617 328 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 RAB4AP20338 218 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 RNF185Q96GF1 192 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 LINC00477Q96M19 166 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 PPP1R14DQ9NXH3 145 aa12.35□□□□□ -0.43
COL4A1-204ENST00000543140 ZNF469Q96JG9 3925 aaPredicted RBP12.34□□□□□ -0.43
COL4A1-204ENST00000543140 M0R143 59 aa12.34□□□□□ -0.43
COL4A1-204ENST00000543140 KIR3DS1Q14943 382 aa12.34□□□□□ -0.43
COL4A1-204ENST00000543140 ZFAND2AQ8N6M9 145 aa12.34□□□□□ -0.43
COL4A1-204ENST00000543140 ZNF702PQ9H963 129 aa12.34□□□□□ -0.43
COL4A1-204ENST00000543140 SORL1Q92673 2214 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 SPRY2O43597 315 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 EVI2AP22794 236 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 TFPI2P48307 235 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 ZNF124Q15973 351 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 LRRC75A-AS1Q8N1F1 130 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 OR8A1Q8NGG7 326 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms