RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZNF431Q8TF32 576 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TSKUQ8WUA8 353 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C4orf3Q8WVX3 66 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LCN9Q8WX39 176 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 POP5Q969H6 163 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPTSSAQ969W0 71 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00526Q96FQ7 95 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZC2HC1AQ96GY0 325 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 C20orf166-AS1Q96NR2 134 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR8B2Q96RD0 313 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SMIM7Q9BQ49 75 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NAA38Q9BRA0 125 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q9BRP9 147 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 DPY30Q9C005 99 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 AGPAT4-IT1Q9H0P7 198 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CST11Q9H112 138 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q9H521 79 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM106BQ9NUM4 274 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM242Q9NWH2 141 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NDUFB11Q9NX14 153 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 FKBP11Q9NYL4 201 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LSM2Q9Y333 95 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SERP1Q9Y6X1 66 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCN4AP35499 1836 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLX4Q8IY92 1834 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 UACAQ9BZF9 1416 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 PTPRBP23467 1997 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYH11P35749 1972 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 LAMC3Q9Y6N6 1575 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 ABCA3Q99758 1704 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MARF1Q9Y4F3 1742 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CDK5RAP2Q96SN8 1893 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 NYNRINQ9P2P1 1898 aaKnown RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 TET2Q6N021 2002 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 DOCK6Q96HP0 2047 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 FANCAO15360 1455 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCDC141Q6ZP82 1450 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 IFT140Q96RY7 1462 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAP3K4Q9Y6R4 1608 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 RBBP6Q7Z6E9 1792 aaKnown RBP0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIDINS220Q9ULH0 1771 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL1A2P08123 1366 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLIT3O75094 1523 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLIT2O94813 1529 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 EPRSP07814 1512 aaKnown RBP0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIAA1549LQ6ZVL6 1849 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 PHIPQ8WWQ0 1821 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 TUBGCP6Q96RT7 1819 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF638Q14966 1978 aaKnown RBP0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 DOCK4Q8N1I0 1966 aa0.34□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-42A0A075B6H8 117 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLV2-18A0A075B6J9 118 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMSB15BA0A087X1C1 80 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV3D-11A0A0A0MRZ8 115 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV14DV4A0A0A6YYC5 116 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV10A0A0B4J240 114 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV3A0A0B4J244 114 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV12-1A0A0B4J245 112 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV1-1A0A0B4J248 108 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 MUC21A0A140T8X8 626 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 UBE2L5PA0A1B0GUS4 154 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A1W2PNM2 257 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 COLCA2A8K830 154 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ODF3BA8MYP8 253 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 OOSP1A8MZH6 123 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C5orf67F2Z3F1 127 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 M0R129 80 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CHD1O14646 1710 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 DSCAMO60469 2012 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PITX3O75364 302 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 NDUFB6O95139 128 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 UBL3O95164 117 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 WISP3O95389 354 aaPredicted RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLV1-51P01701 117 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 GYPAP02724 150 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CRPP02741 224 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRB2P02812 416 aaPredicted RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IL5P05113 134 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ASAH2BP0C7U1 165 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 MGST1P10620 155 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFA4P12838 97 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 COX7CP15954 63 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADCYAP1P18509 176 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CLIP1P30622 1438 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ASIPP42127 132 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SSR2P43308 183 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 HCFC1P51610 2035 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 RPL26P61254 145 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 UBE2L3P68036 154 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 DCDP81605 110 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ERHP84090 104 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q0VG73 95 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CPSF1Q10570 1443 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 EIF4EBP1Q13541 118 aaPredicted RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ELOBQ15370 118 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL24A1Q17RW2 1714 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IQCJQ1A5X6 159 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP25-1Q3LHN0 102 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SPRNQ5BIV9 151 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PYY3Q5JQD4 70 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms