RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 H3BRN7 92 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 J3QKU1 62 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 K7EM74 188 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 SPINK13Q1W4C9 94 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 C8orf86Q6ZUL3 223 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 DNAJC30Q96LL9 226 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 TPSG1Q9NRR2 321 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 IGHV1-69DA0A0B4J2H0 117 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 IGHV1-24A0A0C4DH33 117 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 IGHV1-69P01742 117 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 COX8AP10176 69 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 TMEM141Q96I45 108 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 SORL1Q92673 2214 aa9.1□□□□□ -0.95
PTPRF-203ENST00000372407 HIST1H4AP62805 103 aaKnown RBP9.1□□□□□ -0.95
PTPRF-203ENST00000372407 PRR30Q53SZ7 412 aaPredicted RBP9.1□□□□□ -0.95
PTPRF-203ENST00000372407 THAP8Q8NA92 274 aa9.1□□□□□ -0.95
PTPRF-203ENST00000372407 FXYD5Q96DB9 178 aa9.1□□□□□ -0.95
PTPRF-203ENST00000372407 KAAG1Q9UBP8 84 aa9.1□□□□□ -0.95
PTPRF-203ENST00000372407 SIGLEC8Q9NYZ4 499 aa9.1□□□□□ -0.95
PTPRF-203ENST00000372407 SPINK8P0C7L1 97 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 RUSC1-AS1Q66K80 236 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 ZNF625Q96I27 306 aaPredicted RBP9.09□□□□□ -0.95
PTPRF-203ENST00000372407 FREM1Q5H8C1 2179 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 C9orf118A6NHY6 69 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 NDUFA4O00483 81 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 ETDBQ3ZM63 59 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 EML6Q6ZMW3 1958 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 DEFB130BP0DP73 79 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 DEFB130AP0DP74 79 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 SS18Q15532 418 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 SMIM2Q9BVW6 85 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 F8VRH5 84 aa9.09□□□□□ -0.95
PTPRF-203ENST00000372407 IGHV1OR15-1A0A075B7D0 117 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 IGHV2-70DA0A0C4DH43 119 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 ZC2HC1AQ96GY0 325 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 MRPL35Q9NZE8 188 aaKnown RBP9.08□□□□□ -0.96
PTPRF-203ENST00000372407 XCL2Q9UBD3 114 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 NPYP01303 97 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 FAM215AQ9Y5M1 114 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 ANXA2RQ3ZCQ2 193 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 ZNF491Q8N8L2 437 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 SSC4DQ8WTU2 575 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 I3L3M4 83 aa9.08□□□□□ -0.96
PTPRF-203ENST00000372407 VWC2Q2TAL6 325 aa9.07□□□□□ -0.96
PTPRF-203ENST00000372407 C1orf122Q6ZSJ8 110 aa9.07□□□□□ -0.96
PTPRF-203ENST00000372407 DIAPH2-AS1Q14236 149 aa9.07□□□□□ -0.96
PTPRF-203ENST00000372407 COA6Q5JTJ3 125 aaKnown RBP9.07□□□□□ -0.96
PTPRF-203ENST00000372407 CDKN1BP46527 198 aa9.07□□□□□ -0.96
PTPRF-203ENST00000372407 CEP350Q5VT06 3117 aa9.07□□□□□ -0.96
PTPRF-203ENST00000372407 NPSP0C0P6 89 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 RNF114Q9Y508 228 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 HLA-DRB4P13762 266 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 PYGO2Q9BRQ0 406 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 HLA-DRB4X5D2U9 266 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 NACAE9PAV3 2078 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 DOPEY1Q5JWR5 2465 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 GAGE12JA6NER3 117 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 INS-IGF2F8WCM5 200 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 INAFM2P0DMQ5 153 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 GAGE1Q13065 139 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 GAGE4Q13068 117 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 GAGE5Q13069 117 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 BVES-AS1Q5T3Y7 98 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 KLK9Q9UKQ9 250 aa9.06□□□□□ -0.96
PTPRF-203ENST00000372407 RNF223E7ERA6 249 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 K7EP13 123 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 TCTEX1D4Q5JR98 221 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 ZNF48Q96MX3 618 aaPredicted RBP9.05□□□□□ -0.96
PTPRF-203ENST00000372407 KLF12Q9Y4X4 402 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 IGLC7A0M8Q6 106 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 PPDPFLQ8WWR9 84 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 DENND4CQ5VZ89 1909 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 TRAV26-2A0A0B4J265 109 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 GAGE2AQ6NT46 116 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 C11orf53Q8IXP5 236 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 NDUFA12Q9UI09 145 aa9.05□□□□□ -0.96
PTPRF-203ENST00000372407 K7EN84 100 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 C8orf31Q8N9H6 132 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 C20orf78Q9BR46 151 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 WT1P19544 449 aaPredicted RBP9.04□□□□□ -0.96
PTPRF-203ENST00000372407 TAL2Q16559 108 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 OR11H6Q8NGC7 330 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 RNF138Q8WVD3 245 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 F8W1H4 67 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 LTAP01374 205 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 LYPD6Q86Y78 171 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 PTPRSQ13332 1948 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 PLXNA2O75051 1894 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 TRBV25-1A0A075B6N4 114 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 IGHV3-16A0A0C4DH30 117 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 ZNF747Q9BV97 191 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 SPANXA1Q9NS26 97 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 PRO1854Q9UHT4 67 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 PLXND1Q9Y4D7 1925 aa9.04□□□□□ -0.96
PTPRF-203ENST00000372407 WIPF2Q8TF74 440 aaPredicted RBP9.03□□□□□ -0.96
PTPRF-203ENST00000372407 IGF2RP11717 2491 aa9.03□□□□□ -0.96
PTPRF-203ENST00000372407 VWC2LB2RUY7 222 aa9.03□□□□□ -0.96
PTPRF-203ENST00000372407 LINC01619G3V211 115 aa9.03□□□□□ -0.96
PTPRF-203ENST00000372407 NDUFS7O75251 213 aa9.03□□□□□ -0.96
PTPRF-203ENST00000372407 H3BMM0 161 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms