RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 TRBV12-3P01733 135 aa13.38□□□□□ -0.27
COL9A1-201ENST00000320755 IGHV3-11P01762 117 aa13.38□□□□□ -0.27
COL9A1-201ENST00000320755 RAB9AP51151 201 aa13.38□□□□□ -0.27
COL9A1-201ENST00000320755 UBE2V1Q13404 147 aa13.38□□□□□ -0.27
COL9A1-201ENST00000320755 C12orf54Q6X4T0 127 aa13.38□□□□□ -0.27
COL9A1-201ENST00000320755 TRAV41A0A0B4J266 112 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 COX8AP10176 69 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 RPL11P62913 178 aaKnown RBP13.37□□□□□ -0.27
COL9A1-201ENST00000320755 SLC50A1Q9BRV3 221 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 MAP1LC3AQ9H492 121 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 DKK2Q9UBU2 259 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 LEPP41159 167 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 LCNL1Q6ZST4 164 aa13.37□□□□□ -0.27
COL9A1-201ENST00000320755 TRAV26-2A0A0B4J265 109 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 TNFRSF6BO95407 300 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 IGF1P05019 195 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 ARL6IP6Q8N6S5 226 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 PIEZO1Q92508 2521 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 TRBV7-1A0A0A6YYK4 115 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 TAX1BP3O14907 124 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 NMUP48645 174 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 PAX8Q06710 450 aa13.36□□□□□ -0.27
COL9A1-201ENST00000320755 CREBBPQ92793 2442 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 HIST1H1AQ02539 215 aaPredicted RBP13.35□□□□□ -0.27
COL9A1-201ENST00000320755 OR4C5Q8NGB2 326 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 USP9XQ93008 2570 aaPredicted RBP13.35□□□□□ -0.27
COL9A1-201ENST00000320755 POLQO75417 2590 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 IGHV4-61A0A0C4DH41 118 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 LINC01559Q495D7 138 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 UNQ9165/PRO28630Q6UXU0 137 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 C2orf91Q6ZV80 131 aa13.35□□□□□ -0.27
COL9A1-201ENST00000320755 ARL3P36405 182 aa13.34□□□□□ -0.27
COL9A1-201ENST00000320755 MOB4Q9Y3A3 225 aa13.34□□□□□ -0.27
COL9A1-201ENST00000320755 PRSS1P07477 247 aa13.34□□□□□ -0.27
COL9A1-201ENST00000320755 IGHV4-38-2P0DP08 117 aa13.33□□□□□ -0.27
COL9A1-201ENST00000320755 ACACBO00763 2458 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 SMAD7O15105 426 aaKnown RBP13.33□□□□□ -0.28
COL9A1-201ENST00000320755 LGALS9BQ3B8N2 356 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 SPANXN1Q5VSR9 72 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 LGALS9CQ6DKI2 356 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 DEFB125Q8N687 156 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 PIFOQ8TCI5 191 aa13.33□□□□□ -0.28
COL9A1-201ENST00000320755 FAM208BQ5VWN6 2430 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 IGHV1-69DA0A0B4J2H0 117 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 H3BVH4 76 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 IGHV1-69P01742 117 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 AMMECR1LQ6DCA0 310 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 PCP2Q8IVA1 136 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 GLMPQ8WWB7 406 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 C20orf173Q96LM9 149 aa13.32□□□□□ -0.28
COL9A1-201ENST00000320755 RBAKDNA6NC62 111 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 PRR9Q5T870 116 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 KLK15Q9H2R5 256 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 PPBPP02775 128 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 TMEM158Q8WZ71 300 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 ZFYVE26Q68DK2 2539 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 PF4V1P10720 104 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 BLCAPP62952 87 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 TMEM97Q5BJF2 176 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 PSMG3-AS1Q96PY0 264 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 CNFNQ9BYD5 112 aa13.31□□□□□ -0.28
COL9A1-201ENST00000320755 SORL1Q92673 2214 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 H3BUX3 64 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 SRD5A1P18405 259 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 Q6ZS46 218 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 SMIM15Q7Z3B0 74 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 RNASE8Q8TDE3 154 aaKnown RBP13.3□□□□□ -0.28
COL9A1-201ENST00000320755 NAA38Q9BRA0 125 aaKnown RBP13.3□□□□□ -0.28
COL9A1-201ENST00000320755 TTTY13Q9BZ97 58 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 FGF6P10767 208 aa13.3□□□□□ -0.28
COL9A1-201ENST00000320755 F6UB75 175 aa13.29□□□□□ -0.28
COL9A1-201ENST00000320755 TM4SF20Q53R12 229 aa13.29□□□□□ -0.28
COL9A1-201ENST00000320755 M0R381 172 aa13.29□□□□□ -0.28
COL9A1-201ENST00000320755 SRSF2Q01130 221 aaKnown RBP13.29□□□□□ -0.28
COL9A1-201ENST00000320755 CSMD2Q7Z408 3487 aa13.29□□□□□ -0.28
COL9A1-201ENST00000320755 C7orf71A4D174 169 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 OR2K2Q8NGT1 345 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 FOXC2Q99958 501 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 IGHV7-4-1A0A0J9YVY3 117 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 FCER1GP30273 86 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 NXT2Q9NPJ8 142 aaKnown RBP13.28□□□□□ -0.28
COL9A1-201ENST00000320755 U3KQE9 123 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 C9orf47Q6ZRZ4 202 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 CCL19Q99731 98 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 PIMREGQ9BSJ6 248 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 HIF1ANQ9NWT6 349 aa13.28□□□□□ -0.28
COL9A1-201ENST00000320755 TRAV8-6A0A0B4J262 113 aa13.27□□□□□ -0.28
COL9A1-201ENST00000320755 ATP5J2P56134 94 aa13.27□□□□□ -0.28
COL9A1-201ENST00000320755 KIR3DS1Q14943 382 aa13.27□□□□□ -0.28
COL9A1-201ENST00000320755 A1L4Q6 167 aa13.27□□□□□ -0.29
COL9A1-201ENST00000320755 CD5LO43866 347 aa13.27□□□□□ -0.29
COL9A1-201ENST00000320755 ZANQ9Y493 2812 aa13.27□□□□□ -0.29
COL9A1-201ENST00000320755 S100A4P26447 101 aaKnown RBP13.26□□□□□ -0.29
COL9A1-201ENST00000320755 WFDC12Q8WWY7 111 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 RAB37Q96AX2 223 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 FAM223BA6NKX1 122 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 FAM223AQ8IWN6 122 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 BOD1L2Q8IYS8 172 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 DOPEY1Q5JWR5 2465 aa13.26□□□□□ -0.29
COL9A1-201ENST00000320755 SMIM17P0DL12 118 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms