RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 SRSF1Q07955 248 aaKnown RBP eCLIP6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 TMEM170AQ8WVE7 144 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 RITA1Q96K30 269 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 GGTLC3B5MD39 225 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 M0R143 59 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 CD28P10747 220 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 UTF1Q5T230 341 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 CITED2Q99967 270 aaPredicted RBP6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 PTPN13Q12923 2485 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 TRBV25-1A0A075B6N4 114 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 TRAV5A0A0B4J249 113 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 ATP5G1P05496 136 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 SLC25A2Q9BXI2 301 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 ICOSQ9Y6W8 199 aa6.67□□□□□ -1.34
PDLIM5-201ENST00000317968 IGKV2-40A0A087WW87 121 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 IGKV2D-40P01614 121 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 IGHG4P01861 327 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 CTSGP08311 255 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 GPHB5Q86YW7 130 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 TANC2Q9HCD6 1990 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 HIVEP2P31629 2446 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 HNRNPA3P51991 378 aaKnown RBP6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 TRBV6-1A0A0K0K1D8 114 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 RBAKDNA6NC62 111 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 ZNF561-AS1K7EIQ3 104 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 CIDEAO60543 219 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 SRSF3P84103 164 aaKnown RBP6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 PSMG3-AS1Q96PY0 264 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 H3BVH4 76 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 FXYD5Q96DB9 178 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 HSPB9Q9BQS6 159 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 SLURP1P55000 103 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 HIST2H2BCQ6DN03 193 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 DYNAPQ8N1N2 210 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 OCC1Q8TAD7 63 aa6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 AURKAIP1Q9NWT8 199 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-201ENST00000317968 CSPG4Q6UVK1 2322 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 IZUMO1RA6ND01 250 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 NDUFA7O95182 113 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 LINC01559Q495D7 138 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 TMEM136Q6ZRR5 245 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 GFRA4Q9GZZ7 299 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 KLK15Q9H2R5 256 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 DIRC3C9JPN6 131 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 TSKUQ8WUA8 353 aa6.65□□□□□ -1.34
PDLIM5-201ENST00000317968 GAGE12BA1L429 117 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 GAGE7O76087 117 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 GAGE12FP0CL80 117 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 GAGE12GP0CL81 117 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 GAGE12IP0CL82 117 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 RHOHQ15669 191 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 PDZD11Q5EBL8 140 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 RNF183Q96D59 192 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 MRPL23Q16540 153 aaKnown RBP6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 TMEM170BQ5T4T1 132 aa6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 TRPT1Q86TN4 253 aaKnown RBP6.65□□□□□ -1.35
PDLIM5-201ENST00000317968 GNG5P63218 68 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 KNCNA6PVL3 124 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 VCYO14598 125 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 SPRY2O43597 315 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 C15orf53Q8NAA6 179 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 DOPEY2Q9Y3R5 2298 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 A0A087X0K7 114 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 LURAP1LQ8IV03 231 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 E7EUB6 86 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 SPINK13Q1W4C9 94 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 Q6ZWC4 215 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 PYGO2Q9BRQ0 406 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 CCDC168Q8NDH2 2452 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 F8W735 103 aaPredicted RBP6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 RASL10AQ92737 203 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 FAM167A-AS1Q96KT0 104 aa6.64□□□□□ -1.35
PDLIM5-201ENST00000317968 IGKV1D-37A0A075B6S9 117 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 IGKV1OR2-108A0A075B7D4 117 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 LEPROTL1O95214 131 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 Q86TA4 180 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 TRBV7-9A0A0J9YWB2 115 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 ZNF414Q96IQ9 312 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 MRPL18Q9H0U6 180 aaKnown RBP6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 A6NDN8 102 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 IFITM10A6NMD0 228 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 PATE2Q6UY27 113 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 CBLN1P23435 193 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 ZNF876PQ49A33 203 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 PLA2G2EQ9NZK7 142 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 BLCAPP62952 87 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 DEFB136Q30KP8 78 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 BCL6BQ8N143 479 aaPredicted RBP6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 SELENOKQ9Y6D0 94 aa6.63□□□□□ -1.35
PDLIM5-201ENST00000317968 BUB3O43684 328 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 DNAL4O96015 105 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 ADCYAP1P18509 176 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 C16orf54Q6UWD8 224 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 GNB1LQ9BYB4 327 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 IGHV4OR15-8A0A075B7B6 117 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 A0A087WW49 117 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 CDK2AP2O75956 126 aa6.62□□□□□ -1.35
PDLIM5-201ENST00000317968 TMEM95Q3KNT9 176 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms