RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 NBPF19A0A087WUL8 3843 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 TRAV8-2A0A0B4J237 113 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 CD5LO43866 347 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 ANKRD39Q53RE8 183 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 C8orf86Q6ZUL3 223 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 ATP6V0BQ99437 205 aa12.62□□□□□ -0.39
HOXD3-201ENST00000249440 NXT2Q9NPJ8 142 aaKnown RBP12.62□□□□□ -0.39
HOXD3-201ENST00000249440 FAM208BQ5VWN6 2430 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 IGKV3D-20A0A0C4DH25 116 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 LINC01546A6NGU7 62 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 SNAI2O43623 268 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 TNFRSF6BO95407 300 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 ZNF843Q8N446 348 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 U3KQE9 123 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 IGHV3-49A0A0A0MS15 119 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 ZNF207O43670 478 aaKnown RBP12.61□□□□□ -0.39
HOXD3-201ENST00000249440 PPIFP30405 207 aaKnown RBP12.61□□□□□ -0.39
HOXD3-201ENST00000249440 MOB4Q9Y3A3 225 aa12.61□□□□□ -0.39
HOXD3-201ENST00000249440 LRRK2Q5S007 2527 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 TRAV41A0A0B4J266 112 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 FGF6P10767 208 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 C9orf47Q6ZRZ4 202 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 OR4C5Q8NGB2 326 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 CENPEQ02224 2701 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 FAM223BA6NKX1 122 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 TMEM219Q86XT9 240 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 FAM223AQ8IWN6 122 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 BOD1L2Q8IYS8 172 aa12.6□□□□□ -0.39
HOXD3-201ENST00000249440 ITLN2Q8WWU7 325 aaPredicted RBP12.6□□□□□ -0.39
HOXD3-201ENST00000249440 FCER1GP30273 86 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 SMIM15Q7Z3B0 74 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 CBY1Q9Y3M2 126 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 GAS8-AS1O95177 125 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 LEPP41159 167 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 TMEM97Q5BJF2 176 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 CELSR2Q9HCU4 2923 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 C11orf21Q9P2W6 132 aa12.59□□□□□ -0.39
HOXD3-201ENST00000249440 SEC11AP67812 179 aa12.58□□□□□ -0.4
HOXD3-201ENST00000249440 C16orf92Q96LL3 132 aa12.58□□□□□ -0.4
HOXD3-201ENST00000249440 EVI2AP22794 236 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 C18orf15Q96N68 181 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 CBY3A6NI87 242 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 SMAD7O15105 426 aaKnown RBP12.57□□□□□ -0.4
HOXD3-201ENST00000249440 TRGV3P03979 118 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 CRIP2P52943 208 aaPredicted RBP12.57□□□□□ -0.4
HOXD3-201ENST00000249440 FOXE3Q13461 319 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 C19orf54Q5BKX5 351 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 OR9G4Q8NGQ1 327 aa12.57□□□□□ -0.4
HOXD3-201ENST00000249440 ZFHX3Q15911 3703 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 C19orf84I3L1E1 186 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 SIVA1O15304 175 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 ERASQ7Z444 233 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 WFDC3Q8IUB2 231 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 Q8N8P6 123 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 DKK2Q9UBU2 259 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 LINC00527Q9UJ94 153 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 DOPEY1Q5JWR5 2465 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV1-69DA0A0B4J2H0 117 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV7-4-1A0A0J9YVY3 117 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 K7EP13 123 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV1-69P01742 117 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV4-39P01824 125 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 ARL3P36405 182 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 PSMG4Q5JS54 123 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 C9orf139Q6ZV77 190 aa12.56□□□□□ -0.4
HOXD3-201ENST00000249440 MAP1AP78559 2803 aaPredicted RBP12.56□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV3OR16-10A0A075B7F0 116 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 A1L4Q6 167 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 GATA1P15976 413 aaPredicted RBP12.55□□□□□ -0.4
HOXD3-201ENST00000249440 PIFOQ8TCI5 191 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 GLMPQ8WWB7 406 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 PEF1Q9UBV8 284 aaKnown RBP12.55□□□□□ -0.4
HOXD3-201ENST00000249440 LENEPQ9Y5L5 61 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 OR2K2Q8NGT1 345 aa12.55□□□□□ -0.4
HOXD3-201ENST00000249440 IGHV4-4A0A075B6R2 117 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 C7orf71A4D174 169 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 PRSS1P07477 247 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 SPANXN1Q5VSR9 72 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 AMMECR1LQ6DCA0 310 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 ABCA2Q9BZC7 2435 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 NMUP48645 174 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 TCTAP57738 103 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 BRD3OSQ6XYD6 125 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 MEGF9Q9H1U4 602 aa12.54□□□□□ -0.4
HOXD3-201ENST00000249440 IGLV2-18A0A075B6J9 118 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 PRSS47A8MTI9 375 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 OR4X2Q8NGF9 303 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 TMEM158Q8WZ71 300 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 UFC1Q9Y3C8 167 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 FBN2P35556 2912 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 TRAV40A0A0B4J280 105 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 A6NDN8 102 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 NDUFA4O00483 81 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 IGF1P05019 195 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 SRSF1Q07955 248 aaKnown RBP eCLIP12.53□□□□□ -0.4
HOXD3-201ENST00000249440 HSD52Q0P140 79 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 ODF1Q14990 250 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 ZMAT4Q9H898 229 aa12.53□□□□□ -0.4
HOXD3-201ENST00000249440 HELZ2Q9BYK8 2649 aaKnown RBP12.52□□□□□ -0.4
HOXD3-201ENST00000249440 RNASE8Q8TDE3 154 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms