RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CDSNQ15517 529 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 FBXL19-AS1Q494R0 122 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 TEX36Q5VZQ5 186 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 TEX29Q8N6K0 151 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 FLYWCH2Q96CP2 140 aaKnown RBP10.49□□□□□ -0.73
CLK3-206ENST00000562078 ASCL2Q99929 193 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 CFAP46Q8IYW2 2715 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 ABCA4P78363 2273 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 HIVEP3Q5T1R4 2406 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 FSTL3O95633 263 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 SAA2P0DJI9 122 aaPredicted RBP10.49□□□□□ -0.73
CLK3-206ENST00000562078 PRB4P10163 310 aaPredicted RBP10.49□□□□□ -0.73
CLK3-206ENST00000562078 ID1P41134 155 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 ATP6V0E2Q8NHE4 81 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 LINC01560Q8TB33 94 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 CARD19Q96LW7 228 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 HARBI1Q96MB7 349 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 KIR2DL4Q99706 377 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 PRNDQ9UKY0 176 aa10.49□□□□□ -0.73
CLK3-206ENST00000562078 TRBV20-1A0A075B6N2 111 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 FCER1GP30273 86 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 PAX8Q06710 450 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 SLC25A48Q6ZT89 311 aaKnown RBP10.48□□□□□ -0.73
CLK3-206ENST00000562078 SRSF12Q8WXF0 261 aaKnown RBP10.48□□□□□ -0.73
CLK3-206ENST00000562078 FMC1Q96HJ9 113 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 RAB9BQ9NP90 201 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 RIGQ13278 110 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 LINC00305Q7Z4B0 112 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 MAPKAPK5-AS1Q8N8E1 139 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 ZNF714Q96N38 554 aa10.48□□□□□ -0.73
CLK3-206ENST00000562078 SHISA9B4DS77 424 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 ARL3P36405 182 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 CD69Q07108 199 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 SFTA2Q6UW10 78 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 CCL17Q92583 94 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 TCRAP04437 139 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 DYNLRB1Q9NP97 96 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 ZNRD1Q9P1U0 126 aa10.47□□□□□ -0.73
CLK3-206ENST00000562078 DCHS2Q6V1P9 2916 aa10.46□□□□□ -0.73
CLK3-206ENST00000562078 E7EQL1 145 aa10.46□□□□□ -0.73
CLK3-206ENST00000562078 PRCDQ00LT1 54 aa10.46□□□□□ -0.73
CLK3-206ENST00000562078 AMN1Q8IY45 258 aa10.46□□□□□ -0.73
CLK3-206ENST00000562078 PIFOQ8TCI5 191 aa10.46□□□□□ -0.73
CLK3-206ENST00000562078 GAGE12JA6NER3 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 ZNF785A8K8V0 405 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 FCN3O75636 299 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 GAGE7O76087 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 GAGE12FP0CL80 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 GAGE12GP0CL81 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 GAGE12IP0CL82 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 RNASE2P10153 161 aaKnown RBP10.46□□□□□ -0.74
CLK3-206ENST00000562078 GAGE4Q13068 117 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 ZC2HC1BQ5TFG8 222 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 PRNTQ86SH4 94 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 HIST1H4GQ99525 98 aa10.46□□□□□ -0.74
CLK3-206ENST00000562078 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.45□□□□□ -0.74
CLK3-206ENST00000562078 SMKR1H3BMG3 65 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 TMEM178BH3BS89 294 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 CD3EP07766 207 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 PRTN3P24158 256 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 KIR2DS2P43631 304 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 C2orf83Q53S99 150 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 MORN3Q6PF18 240 aaPredicted RBP10.45□□□□□ -0.74
CLK3-206ENST00000562078 Q86TA4 180 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.45□□□□□ -0.74
CLK3-206ENST00000562078 RITA1Q96K30 269 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 RPUSD1Q9UJJ7 312 aaKnown RBP10.45□□□□□ -0.74
CLK3-206ENST00000562078 FABP5P3A8MUU1 101 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 SRSF1Q07955 248 aaKnown RBP eCLIP10.45□□□□□ -0.74
CLK3-206ENST00000562078 KLF17Q5JT82 389 aaPredicted RBP10.45□□□□□ -0.74
CLK3-206ENST00000562078 OR1L4Q8NGR5 311 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 AJUBAQ96IF1 538 aa10.45□□□□□ -0.74
CLK3-206ENST00000562078 A0A087WX48 190 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 TMEM213A2RRL7 107 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 CCL3L1P16619 93 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 ORM2P19652 201 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 GATD1Q8NB37 220 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 NPIPB3Q92617 1050 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 Q9H3A6 140 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 ZMAT4Q9H898 229 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 LINC00574Q9H8X3 128 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 ZFYVE26Q68DK2 2539 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 HRNRQ86YZ3 2850 aaPredicted RBP10.44□□□□□ -0.74
CLK3-206ENST00000562078 SPTBN1Q01082 2364 aaKnown RBP10.44□□□□□ -0.74
CLK3-206ENST00000562078 IGKCP01834 107 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 PRB1P04280 392 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 PSMB2P49721 201 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 NDUFV3P56181 108 aaKnown RBP10.44□□□□□ -0.74
CLK3-206ENST00000562078 LYPD2Q6UXB3 125 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 ORMDL3Q8N138 153 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 PPDPFLQ8WWR9 84 aa10.44□□□□□ -0.74
CLK3-206ENST00000562078 NAV3Q8IVL0 2385 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 EPG5Q9HCE0 2579 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 TMSB15BA0A087X1C1 80 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 PRSS1P07477 247 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 RAX2Q96IS3 184 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 IGKV1D-37A0A075B6S9 117 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 NPYP01303 97 aa10.43□□□□□ -0.74
CLK3-206ENST00000562078 DLX4Q92988 240 aaPredicted RBP10.43□□□□□ -0.74
CLK3-206ENST00000562078 YAE1D1Q9NRH1 226 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms