RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	C21orf62	Q9NYP8	219 aa		11.52	□□□□□ -0.56
DDX55-209	ENST00000542286		H3BUT2	72 aa		11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	MRPS12	O15235	138 aa	Known RBP	11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	CSN3	P07498	182 aa		11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	AJUBA	Q96IF1	538 aa		11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	SIRPD	Q9H106	197 aa		11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	HSPB8	Q9UJY1	196 aa		11.52	□□□□□ -0.57
DDX55-209	ENST00000542286	C9orf118	A6NHY6	69 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	PIP4P2	Q8N4L2	257 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	ZNF207	O43670	478 aa	Known RBP	11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	ARMS2	P0C7Q2	107 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	LINC01545	Q5VT33	79 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286		Q8N9W7	124 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	OR1N2	Q8NGR9	330 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	ITLN2	Q8WWU7	325 aa	Predicted RBP	11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	PSG8	Q9UQ74	426 aa		11.51	□□□□□ -0.57
DDX55-209	ENST00000542286	MFAP4	P55083	255 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	TMEM14C	Q9P0S9	112 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	DOPEY2	Q9Y3R5	2298 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286		A8MWL6	223 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286		H3BRM9	83 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	CTSG	P08311	255 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	BRD3OS	Q6XYD6	125 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286		Q8N6K4	173 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	ABCA12	Q86UK0	2595 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	WI2-2373I1.2	A0A1W2PRP0	233 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286		K7EP34	96 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	ATP6V0E1	O15342	81 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	GOSR1	O95249	250 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	NEGR1	Q7Z3B1	354 aa		11.5	□□□□□ -0.57
DDX55-209	ENST00000542286	DOPEY1	Q5JWR5	2465 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	OVOL3	O00110	214 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	OR2K2	Q8NGT1	345 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	NDFIP1	Q9BT67	221 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	CHEK1	O14757	476 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	LMO4	P61968	165 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	C15orf32	Q32M92	178 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286	OR10AG1	Q8NH19	301 aa		11.49	□□□□□ -0.57
DDX55-209	ENST00000542286		A6NDN8	102 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	TMEM75	Q8N9X5	138 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	RABAC1	Q9UI14	185 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	SMAD5-AS1	Q9Y6J3	95 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	ZNF462	Q96JM2	2506 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286		A0A0G2JLM5	398 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	TTC9C	Q8N5M4	171 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	RNF182	Q8N6D2	247 aa		11.48	□□□□□ -0.57
DDX55-209	ENST00000542286	NPIPB5	A8MRT5	1133 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	NCR2	O95944	276 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	PSG3	Q16557	428 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	SAMD13	Q5VXD3	122 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	RAB37	Q96AX2	223 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	VGLL1	Q99990	258 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	FBN2	P35556	2912 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	CLEC3B	P05452	202 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	KIR3DS1	Q14943	382 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	CCDC144NL	Q6NUI1	221 aa		11.47	□□□□□ -0.57
DDX55-209	ENST00000542286	APOH	P02749	345 aa	Predicted RBP	11.46	□□□□□ -0.57
DDX55-209	ENST00000542286	FGF6	P10767	208 aa		11.46	□□□□□ -0.57
DDX55-209	ENST00000542286	EFNA4	P52798	201 aa		11.46	□□□□□ -0.57
DDX55-209	ENST00000542286	ZNF747	Q9BV97	191 aa		11.46	□□□□□ -0.57
DDX55-209	ENST00000542286	ZNF492	Q9P255	531 aa		11.46	□□□□□ -0.57
DDX55-209	ENST00000542286	IGHV4-39	P01824	125 aa		11.46	□□□□□ -0.58
DDX55-209	ENST00000542286	FXYD7	P58549	80 aa		11.46	□□□□□ -0.58
DDX55-209	ENST00000542286	CLEC19A	Q6UXS0	136 aa		11.46	□□□□□ -0.58
DDX55-209	ENST00000542286	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	TMEM213	A2RRL7	107 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	PRAC2	D3DTV9	90 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	TCTA	P57738	103 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	ERCC8	Q13216	396 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	NRGN	Q92686	78 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	SRSF8	Q9BRL6	282 aa	Known RBP	11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	NPFFR1	Q9GZQ6	430 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	NPIPB6	E9PJ23	425 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	ZNF80	P51504	273 aa	Predicted RBP	11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	AP5S1	Q9NUS5	200 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	PTPN13	Q12923	2485 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	IGHG4	P01861	327 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	FAM106CP	P0CH98	169 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	CT83	Q5H943	113 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	SPCS1	Q9Y6A9	102 aa		11.45	□□□□□ -0.58
DDX55-209	ENST00000542286	CENPVL3	A0A0U1RRI6	287 aa		11.44	□□□□□ -0.58
DDX55-209	ENST00000542286	TLN2	Q9Y4G6	2542 aa		11.44	□□□□□ -0.58
DDX55-209	ENST00000542286	FAM106A	Q4KMX7	169 aa		11.44	□□□□□ -0.58
DDX55-209	ENST00000542286	PRORY	Q9H606	182 aa		11.44	□□□□□ -0.58
DDX55-209	ENST00000542286	AAMDC	Q9H7C9	122 aa		11.44	□□□□□ -0.58
DDX55-209	ENST00000542286	MXRA5	Q9NR99	2828 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	SERTM2	A0A1B0GWG4	89 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	UBE2E1	P51965	193 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	RPL24	P83731	157 aa	Known RBP	11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	EBI3	Q14213	229 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	LY6E	Q16553	131 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286		Q6ZQT7	251 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	SVIP	Q8NHG7	77 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	ANKRD17	O75179	2603 aa	Known RBP	11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	USP24	Q9UPU5	2620 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286		A0A1W2PPM0	123 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	PPIF	P30405	207 aa	Known RBP	11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	MINOS1	Q5TGZ0	78 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	LCNL1	Q6ZST4	164 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms