RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 HHLA3Q9XRX5 114 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 RALGAPA1Q6GYQ0 2036 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 DOCK11Q5JSL3 2073 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 ARHGAP21Q5T5U3 1957 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 KIAA1549Q9HCM3 1950 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 TCF20Q9UGU0 1960 aaKnown RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 LRP4O75096 1905 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 COL4A2P08572 1712 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 IGLV3-10A0A075B6K4 115 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 C16orf97H3BN30 126 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 MGST1P10620 155 aaKnown RBP4.19□□□□□ -1.74
CD44-236ENST00000533222 PSMB2P49721 201 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 UBE2E1P51965 193 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 PCBD1P61457 104 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 DAD1P61803 113 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 ZFP2Q6ZN57 461 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 C9orf47Q6ZRZ4 202 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 UBE2E2Q96LR5 201 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 METTL26Q96S19 204 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 HIST1H4GQ99525 98 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 NPCDR1Q9BY65 106 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 HES7Q9BYE0 225 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 PRRG4Q9BZD6 226 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 PSENENQ9NZ42 101 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 LSM4Q9Y4Z0 139 aaKnown RBP4.19□□□□□ -1.74
CD44-236ENST00000533222 LHFPL6Q9Y693 200 aa4.19□□□□□ -1.74
CD44-236ENST00000533222 TNS1Q9HBL0 1735 aaKnown RBP4.18□□□□□ -1.74
CD44-236ENST00000533222 IGLV3-16A0A075B6K0 115 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 A0A0B4J2C4 111 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 TRBV30A0A0K0K1B3 111 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 CXorf51AA0A1B0GTR3 108 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 A0A1B0GWA3 101 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PRR32B1ATL7 298 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 K7ERJ3 54 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 IGLV2-8P01709 118 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 BGLAPP02818 100 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 ZNF823P16415 610 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 CCL1P22362 96 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PLNP26678 52 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 NCBP2P52298 156 aaKnown RBP eCLIP4.18□□□□□ -1.74
CD44-236ENST00000533222 ERVK-16P61578 105 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PAX8Q06710 450 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 Q0VFX4 171 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 ZNF56Q15929 161 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 TMEM155Q4W5P6 130 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 ZC2HC1BQ5TFG8 222 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 MIC13Q5XKP0 118 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PVRIGQ6DKI7 326 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 KTN1-AS1Q86SY8 53 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PCP2Q8IVA1 136 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 SFTPA2Q8IWL1 248 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 DCAF4L2Q8NA75 395 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 BRK1Q8WUW1 75 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 ZNF799Q96GE5 643 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 DSCR8Q96T75 97 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 RPP25Q9BUL9 199 aaKnown RBP4.18□□□□□ -1.74
CD44-236ENST00000533222 PLEKHA3Q9HB20 300 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 WDR83OSQ9Y284 106 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 KLK5Q9Y337 293 aaPredicted RBP4.18□□□□□ -1.74
CD44-236ENST00000533222 U3KQK5 164 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 PTPRSQ13332 1948 aa4.18□□□□□ -1.74
CD44-236ENST00000533222 A0A0A6YYD4 124 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 TRAV3A0A0B4J244 114 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 LINC01553A4QN01 128 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 LINC01549A6NIU2 74 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 IBA57-AS1B1ANH7 110 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 PEX7O00628 323 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 LGALS3P17931 250 aaKnown RBP4.17□□□□□ -1.74
CD44-236ENST00000533222 NANOS2P60321 138 aaKnown RBP4.17□□□□□ -1.74
CD44-236ENST00000533222 KLKP1Q107X0 134 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 CENPWQ5EE01 88 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 ATP5EP2Q5VTU8 51 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 LINC00173Q6ZV60 143 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 FP248Q71RG6 208 aaPredicted RBP4.17□□□□□ -1.74
CD44-236ENST00000533222 OR8A1Q8NGG7 326 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 ARHGAP5-AS1Q96IT6 56 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 SLC25A22Q9H936 323 aa4.17□□□□□ -1.74
CD44-236ENST00000533222 PHF3Q92576 2039 aaKnown RBP4.17□□□□□ -1.74
CD44-236ENST00000533222 KIF26BQ2KJY2 2108 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 THADAQ6YHU6 1953 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 MGAMO43451 1857 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 LTBP1Q14766 1721 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 IGHV4-28A0A0C4DH34 117 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 TRBV27A0A0K0K1C4 114 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 TRBV10-3A0A0K0K1G6 114 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 PMS2P5A8MQ11 134 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 TCRAP04437 139 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 PLA2G2AP14555 144 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 DUTP33316 252 aaKnown RBP4.16□□□□□ -1.74
CD44-236ENST00000533222 IFI27P40305 119 aaPredicted RBP4.16□□□□□ -1.74
CD44-236ENST00000533222 SYNJ2BPP57105 145 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 EIF4EBP1Q13541 118 aaPredicted RBP4.16□□□□□ -1.74
CD44-236ENST00000533222 GDF5OSQ5U4N7 250 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 PHF5AQ7RTV0 110 aaKnown RBP4.16□□□□□ -1.74
CD44-236ENST00000533222 PRO1854Q9UHT4 67 aa4.16□□□□□ -1.74
CD44-236ENST00000533222 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.15□□□□□ -1.75
CD44-236ENST00000533222 TRAV12-1A0A0B4J245 112 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 A0A0D9SEW6 157 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 LOC107984156A0A0G2JMH3 177 aa4.15□□□□□ -1.75
CD44-236ENST00000533222 TRBV6-1A0A0K0K1D8 114 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms