RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 UNC79Q9P2D8 2635 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 AKAP9Q99996 3911 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 ZNF705FA8MVS1 300 aaPredicted RBP14.02□□□□□ -0.17
COL9A3-205ENST00000466192 ZNF253O75346 499 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 SERF1AO75920 110 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 IGHG4P01861 327 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 LINC00310P59036 64 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 UNQ9165/PRO28630Q6UXU0 137 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 OR4X2Q8NGF9 303 aa14.02□□□□□ -0.17
COL9A3-205ENST00000466192 A0A087X0K7 114 aa14.01□□□□□ -0.17
COL9A3-205ENST00000466192 SRIP30626 198 aa14.01□□□□□ -0.17
COL9A3-205ENST00000466192 SSBP4Q9BWG4 385 aaPredicted RBP14.01□□□□□ -0.17
COL9A3-205ENST00000466192 A0A0G2JLM5 398 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 SERTM2A0A1B0GWG4 89 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 SMAD7O15105 426 aaKnown RBP14□□□□□ -0.17
COL9A3-205ENST00000466192 CRIP1P50238 77 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 Q0VG73 95 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 GAGE1Q13065 139 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 PRR31Q5SQ13 230 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 C10orf99Q6UWK7 81 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 ATP5L2Q7Z4Y8 100 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 GFRA4Q9GZZ7 299 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 DLEU1O43261 78 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 PSMB8P28062 276 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 RBPMS2Q6ZRY4 209 aaKnown RBP14□□□□□ -0.17
COL9A3-205ENST00000466192 OR4B1Q8NGF8 309 aa14□□□□□ -0.17
COL9A3-205ENST00000466192 SONP18583 2426 aaKnown RBP14□□□□□ -0.17
COL9A3-205ENST00000466192 A0A1B0GXF2 115 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 NDUFA4O00483 81 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 VGLL1Q99990 258 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 CBY1Q9Y3M2 126 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 CT45A10P0DMU9 189 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 LCN12Q6JVE5 192 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 IL17RELQ6ZVW7 336 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 RNF182Q8N6D2 247 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 TMEM208Q9BTX3 173 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 GOLT1BQ9Y3E0 138 aa13.99□□□□□ -0.17
COL9A3-205ENST00000466192 SCGB1D1O95968 90 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 HBBP68871 147 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 C16orf54Q6UWD8 224 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 ARL6IP6Q8N6S5 226 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 Q8TAT8 98 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 FAM231BA6NCW3 169 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 ZNF702PQ9H963 129 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 NAGKQ9UJ70 344 aa13.98□□□□□ -0.17
COL9A3-205ENST00000466192 RPLP1P05386 114 aaKnown RBP13.97□□□□□ -0.17
COL9A3-205ENST00000466192 OR10J3Q5JRS4 329 aa13.97□□□□□ -0.17
COL9A3-205ENST00000466192 PRR25Q96S07 402 aa13.97□□□□□ -0.17
COL9A3-205ENST00000466192 LINC00614P0C842 121 aa13.96□□□□□ -0.17
COL9A3-205ENST00000466192 RCHY1Q96PM5 261 aa13.96□□□□□ -0.17
COL9A3-205ENST00000466192 DUX5Q96PT3 197 aa13.96□□□□□ -0.17
COL9A3-205ENST00000466192 PRAC2D3DTV9 90 aa13.96□□□□□ -0.18
COL9A3-205ENST00000466192 ESDP10768 282 aa13.96□□□□□ -0.18
COL9A3-205ENST00000466192 SIGLECL1Q8N7X8 197 aa13.96□□□□□ -0.18
COL9A3-205ENST00000466192 GLMPQ8WWB7 406 aa13.96□□□□□ -0.18
COL9A3-205ENST00000466192 NPFFR1Q9GZQ6 430 aa13.96□□□□□ -0.18
COL9A3-205ENST00000466192 SAPCD1Q5SSQ6 148 aa13.95□□□□□ -0.18
COL9A3-205ENST00000466192 ACANP16112 2415 aa13.95□□□□□ -0.18
COL9A3-205ENST00000466192 SLC50A1Q9BRV3 221 aa13.95□□□□□ -0.18
COL9A3-205ENST00000466192 SAMD10Q9BYL1 202 aa13.95□□□□□ -0.18
COL9A3-205ENST00000466192 PEF1Q9UBV8 284 aaKnown RBP13.95□□□□□ -0.18
COL9A3-205ENST00000466192 TRAV8-2A0A0B4J237 113 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 TMEM89A2RUT3 159 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 FOXA3P55318 350 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-205ENST00000466192 PAFAH1B2P68402 229 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 ERCC8Q13216 396 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 C8orf86Q6ZUL3 223 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 MYO9AB2RTY4 2548 aa13.94□□□□□ -0.18
COL9A3-205ENST00000466192 SH2D1AO60880 128 aa13.93□□□□□ -0.18
COL9A3-205ENST00000466192 FAM162BQ5T6X4 162 aa13.93□□□□□ -0.18
COL9A3-205ENST00000466192 C18orf32Q8TCD1 76 aa13.93□□□□□ -0.18
COL9A3-205ENST00000466192 TPPP3Q9BW30 176 aa13.93□□□□□ -0.18
COL9A3-205ENST00000466192 FBLL1A6NHQ2 334 aaKnown RBP13.93□□□□□ -0.18
COL9A3-205ENST00000466192 FOXC2Q99958 501 aa13.93□□□□□ -0.18
COL9A3-205ENST00000466192 TMSB15BA0A087X1C1 80 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 NPSP0C0P6 89 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 CD33P20138 364 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 C20orf144Q9BQM9 153 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 ARMS2P0C7Q2 107 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 ZNF80P51504 273 aaPredicted RBP13.92□□□□□ -0.18
COL9A3-205ENST00000466192 KRTAP1-1Q07627 177 aa13.92□□□□□ -0.18
COL9A3-205ENST00000466192 ZNF705AQ6ZN79 300 aaPredicted RBP13.92□□□□□ -0.18
COL9A3-205ENST00000466192 ALKBH7Q9BT30 221 aaPredicted RBP13.92□□□□□ -0.18
COL9A3-205ENST00000466192 A0A1W2PS18 150 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 HAX1O00165 279 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 TM4SF20Q53R12 229 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 Q6ZWC4 215 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 COX8CQ7Z4L0 72 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 KCNS1Q96KK3 526 aa13.91□□□□□ -0.18
COL9A3-205ENST00000466192 FASNP49327 2511 aaKnown RBP13.91□□□□□ -0.18
COL9A3-205ENST00000466192 A0A1B0GUT8 65 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 TMEM189A5PLL7 270 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 ZNF705DP0CH99 300 aaPredicted RBP13.9□□□□□ -0.18
COL9A3-205ENST00000466192 ZNF705BP0CI00 300 aaPredicted RBP13.9□□□□□ -0.18
COL9A3-205ENST00000466192 MIEN1Q9BRT3 115 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 HECTD1Q9ULT8 2610 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 FOXE3Q13461 319 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 TEX43Q6ZNM6 134 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 GPHB5Q86YW7 130 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms