RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TRGV1A0A0A0MS02 117 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 TEX48A0A1B0GUV7 120 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 PRSS46E5RG02 174 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 K7ERJ3 54 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 IGFL4Q6B9Z1 124 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 PKDREJQ9NTG1 2253 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 SPTAN1Q13813 2472 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 IGHV3-73A0A0B4J1V6 119 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 A0A1B0GUS0 222 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 SAP30O75446 220 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 ERCC8Q13216 396 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 DSCR8Q96T75 97 aa8.27□□□□□ -1.09
LIMCH1-203ENST00000396595 RHPN1-AS1Q9BWJ2 59 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 PRO1854Q9UHT4 67 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 NDUFB8O95169 186 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 C3orf36Q3SXR2 165 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 C1orf159Q96HA4 380 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 IGLC7A0M8Q6 106 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 PRSS29PA6NIE9 313 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 HLA-DMBP28068 263 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 Q6ZWC4 215 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 C3orf56Q8N813 242 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 DOCK11Q5JSL3 2073 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 A0A0G2JNJ9 132 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 CHKB-CPT1BH3BT56 60 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 PRIMA1Q86XR5 153 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 Q9UFV3 132 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 CREBBPQ92793 2442 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 B4DSR2 109 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 ZNF726P1Q15940 193 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 AMTNQ6UX39 209 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 LYPD2Q6UXB3 125 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 NDUFA4L2Q9NRX3 87 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 WDR90Q96KV7 1748 aa8.26□□□□□ -1.09
LIMCH1-203ENST00000396595 FAM240AA0A1B0GVK7 77 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 TMEM213A2RRL7 107 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 TRPT1Q86TN4 253 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 THADAQ6YHU6 1953 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 SIVA1O15304 175 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 IGLL1P15814 213 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 C6orf226Q5I0X4 101 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 CYYR1Q96J86 154 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 SHISA9B4DS77 424 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 F6UB75 175 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 CFHR2P36980 270 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 Q8N8P6 123 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 V9GYV3 84 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 PRB2P02812 416 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 DAZ1Q9NQZ3 744 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 SIP14410 1827 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 PTPRDP23468 1912 aa8.25□□□□□ -1.09
LIMCH1-203ENST00000396595 TINCRA0A1B0GVN0 87 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 DEFB104AQ8WTQ1 72 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 SLX1AQ9BQ83 275 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 TRBV19A0A075B6N1 114 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 A0A087WWL8 130 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 CRLF1O75462 422 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 RIF1Q5UIP0 2472 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 TAX1BP3O14907 124 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 KLF5Q13887 457 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 Q6ZS92 163 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 PIP4P2Q8N4L2 257 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 TMEM141Q96I45 108 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 IGKV1-39P01597 117 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 IGKV1D-39P04432 117 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 C1orf195Q5TG92 126 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 C2orf66Q6UXQ4 117 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 C11orf52Q96A22 123 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 SLC25A16P16260 332 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 LGALS9BQ3B8N2 356 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 LGALS9CQ6DKI2 356 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 C11orf44Q8N8P7 122 aa8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 XIRP1Q702N8 1843 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-203ENST00000396595 SBF1O95248 1867 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 RHODO00212 210 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 PRB1P04280 392 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 PSMB8P28062 276 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 BRD3OSQ6XYD6 125 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 LYPD6BQ8NI32 183 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 FAM110DQ8TAY7 271 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 NOTCH3Q9UM47 2321 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 SMIM27A0A1W2PRY6 76 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 NPYP01303 97 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 CACNA1HO95180 2353 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 GATA4P43694 442 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 C12orf74Q32Q52 190 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 TRAV12-2A0A075B6T6 113 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 A0A0B4J2C4 111 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 SH2D6Q7Z4S9 175 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 MUSTN1Q8IVN3 82 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 SCN5AQ14524 2016 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 CACNA1BQ00975 2339 aa8.23□□□□□ -1.09
LIMCH1-203ENST00000396595 COL8A2P25067 703 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 ZNF833PQ6ZTB9 187 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 Q8TCH9 128 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 TP53TG1Q9Y2A0 90 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 IGHV3-53P01767 116 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 C20orf173Q96LM9 149 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 TMEM14CQ9P0S9 112 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms