RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IGHV3-49A0A0A0MS15 119 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 MUC21A0A0G2JKD1 596 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 MUC21A0A140T8X8 626 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 IGHV4-38-2P0DP08 117 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 MUC21Q5SSG8 566 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 CFAP46Q8IYW2 2715 aa16.03■□□□□ 0.16
CCDC88B-203ENST00000359902 RBAKDNA6NC62 111 aa16.02■□□□□ 0.16
CCDC88B-203ENST00000359902 FAM104BQ5XKR9 115 aa16.02■□□□□ 0.16
CCDC88B-203ENST00000359902 PSMG3-AS1Q96PY0 264 aa16.02■□□□□ 0.16
CCDC88B-203ENST00000359902 VPS13CQ709C8 3753 aa16.02■□□□□ 0.16
CCDC88B-203ENST00000359902 ZFHX3Q15911 3703 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 FAM223BA6NKX1 122 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 IGLC6P0CF74 106 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 SRSF2Q01130 221 aaKnown RBP16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 CLEC2AQ6UVW9 174 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 FAM223AQ8IWN6 122 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 FER1L6-AS1Q8NA97 138 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 ATP6V0BQ99437 205 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 U3KQK5 164 aa16.02■□□□□ 0.15
CCDC88B-203ENST00000359902 IGHV4-30-2A0A087WSY4 118 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 TRAV8-2A0A0B4J237 113 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 ATP5J2P56134 94 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 AMN1Q8IY45 258 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 COL12A1Q99715 3063 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 CACNA1AO00555 2505 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 C20orf202A1L168 122 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 FABP5P3A8MUU1 101 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 IGLL1P15814 213 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 Q6ZN92 141 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 AP5S1Q9NUS5 200 aa16.01■□□□□ 0.15
CCDC88B-203ENST00000359902 D6R8Y8 96 aa16■□□□□ 0.15
CCDC88B-203ENST00000359902 TRGV3P03979 118 aa16■□□□□ 0.15
CCDC88B-203ENST00000359902 CELSR1Q9NYQ6 3014 aa16■□□□□ 0.15
CCDC88B-203ENST00000359902 ORM1P02763 201 aa16■□□□□ 0.15
CCDC88B-203ENST00000359902 PRSS3P2Q8NHM4 247 aa16■□□□□ 0.15
CCDC88B-203ENST00000359902 OR4C46A6NHA9 309 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 BATFQ16520 125 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 IL17RELQ6ZVW7 336 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 AGPAT4-IT1Q9H0P7 198 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 IGF1P05019 195 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 TWIST1Q15672 202 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 LY6EQ16553 131 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 C8orf86Q6ZUL3 223 aa15.99■□□□□ 0.15
CCDC88B-203ENST00000359902 MRPL51Q4U2R6 128 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-203ENST00000359902 COL5A1-AS1Q5SY13 56 aa15.98■□□□□ 0.15
CCDC88B-203ENST00000359902 FA2HQ7L5A8 372 aa15.98■□□□□ 0.15
CCDC88B-203ENST00000359902 MAP1LC3CQ9BXW4 147 aa15.98■□□□□ 0.15
CCDC88B-203ENST00000359902 HSPB8Q9UJY1 196 aa15.98■□□□□ 0.15
CCDC88B-203ENST00000359902 IFI27P40305 119 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-203ENST00000359902 HNRNPA3P51991 378 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-203ENST00000359902 PRELID3AQ96N28 172 aa15.97■□□□□ 0.15
CCDC88B-203ENST00000359902 ORMDL3Q8N138 153 aa15.97■□□□□ 0.15
CCDC88B-203ENST00000359902 A6NDX4 124 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 H3BUX3 64 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 MSMBP08118 114 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 ARL3P36405 182 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 LINC01559Q495D7 138 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 FAM106AQ4KMX7 169 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 PET117Q6UWS5 81 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 MRPL53Q96EL3 112 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 SIGLEC8Q9NYZ4 499 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 PPIFP30405 207 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 PCP4P48539 62 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 CNFNQ9BYD5 112 aa15.96■□□□□ 0.15
CCDC88B-203ENST00000359902 LOC389332A0A1B0GUA5 103 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 TMEM8BA6NDV4 472 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 TRBV12-3P01733 135 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 IGHG2P01859 326 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 TSPOP30536 169 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 MSRB1Q9NZV6 116 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 TIMM8BQ9Y5J9 83 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 GLMPQ8WWB7 406 aa15.95■□□□□ 0.14
CCDC88B-203ENST00000359902 C21orf62-AS1Q17RA5 79 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 OR10AG1Q8NH19 301 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 ZNF747Q9BV97 191 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 TMEM191AQ9H0A3 160 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 LAMTOR2Q9Y2Q5 125 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 LOXL1Q08397 574 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 UNQ9165/PRO28630Q6UXU0 137 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 MCRIP2Q9BUT9 160 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 HIF1ANQ9NWT6 349 aa15.94■□□□□ 0.14
CCDC88B-203ENST00000359902 IGSF10Q6WRI0 2623 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 DOPEY1Q5JWR5 2465 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 BRI3O95415 125 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 TMEM78Q5T7P6 136 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 C9orf47Q6ZRZ4 202 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 C11orf21Q9P2W6 132 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 MRPS16Q9Y3D3 137 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 SPG11Q96JI7 2443 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 A0A096LNJ9 63 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 IGKV3D-20A0A0C4DH25 116 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 CKS2P33552 79 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 BLCAPP62952 87 aa15.93■□□□□ 0.14
CCDC88B-203ENST00000359902 FLNCQ14315 2725 aa15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 hDV102S1A0JD36 115 aa15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 SMKR1H3BMG3 65 aa15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 HIST1H1AQ02539 215 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 Q6ZS46 218 aa15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 ST20Q9HBF5 79 aa15.92■□□□□ 0.14
CCDC88B-203ENST00000359902 H0Y8G0 127 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms