RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TPPP3Q9BW30 176 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 MRPS16Q9Y3D3 137 aaKnown RBP10.3□□□□□ -0.76
LDLR-203ENST00000535915 CT45A10P0DMU9 189 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 CSN1S1P47710 185 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 CRIP1P50238 77 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 EBI3Q14213 229 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 CHTOPQ9Y3Y2 248 aaKnown RBP10.29□□□□□ -0.76
LDLR-203ENST00000535915 IGHV1-24A0A0C4DH33 117 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 CIDEAO60543 219 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 RIGQ13278 110 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 TMEM70Q9BUB7 260 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 SIRPDQ9H106 197 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 UBTD1Q9HAC8 227 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 CHD8Q9HCK8 2581 aa10.29□□□□□ -0.76
LDLR-203ENST00000535915 IGHV7-81A0A0B4J1V7 117 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 TMEM238C9JI98 176 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 PSG9Q00887 426 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 AKAP6Q13023 2319 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 NCOR2Q9Y618 2525 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 OVOL3O00110 214 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 SCGB2A1O75556 95 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 EGR2P11161 476 aaPredicted RBP10.28□□□□□ -0.76
LDLR-203ENST00000535915 RPL7P18124 248 aaKnown RBP10.28□□□□□ -0.76
LDLR-203ENST00000535915 ZNF138P52744 262 aa10.28□□□□□ -0.76
LDLR-203ENST00000535915 LEPROTL1O95214 131 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 CTSGP08311 255 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 FAM106CPP0CH98 169 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 FAM120AOSQ5T036 256 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 Q8N9W7 124 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 C1RLQ9NZP8 487 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 RABAC1Q9UI14 185 aa10.27□□□□□ -0.76
LDLR-203ENST00000535915 TRAV9-2A0A087WT02 112 aa10.27□□□□□ -0.77
LDLR-203ENST00000535915 SPATA12Q7Z6I5 190 aa10.27□□□□□ -0.77
LDLR-203ENST00000535915 TMUB1Q9BVT8 246 aa10.27□□□□□ -0.77
LDLR-203ENST00000535915 ZFHX3Q15911 3703 aa10.27□□□□□ -0.77
LDLR-203ENST00000535915 IGHV3OR16-8A0A075B7F1 116 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 IGKV2-40A0A087WW87 121 aaPredicted RBP10.26□□□□□ -0.77
LDLR-203ENST00000535915 IGHV3-35A0A0C4DH35 117 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 IGKV2D-40P01614 121 aaPredicted RBP10.26□□□□□ -0.77
LDLR-203ENST00000535915 CSN3P07498 182 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 LY6DQ14210 128 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 CACNA1BQ00975 2339 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 TMSB15BA0A087X1C1 80 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 SERTM2A0A1B0GWG4 89 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 HSBP1L1C9JCN9 74 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 NHLH1Q02575 133 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 Q6AWC8 147 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 LINC00173Q6ZV60 143 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 ECSCRQ19T08 205 aa10.26□□□□□ -0.77
LDLR-203ENST00000535915 A0A1B0GW15 77 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 TMEM189A5PLL7 270 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 K7ERU9 68 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 UBE2E1P51965 193 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 ITPR1Q14643 2758 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 SYS1-DBNDD2H3BUS1 97 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 IGLL1P15814 213 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 EFNA4P52798 201 aa10.25□□□□□ -0.77
LDLR-203ENST00000535915 OR4C46A6NHA9 309 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 CRXO43186 299 aaPredicted RBP10.24□□□□□ -0.77
LDLR-203ENST00000535915 SH2D1AO60880 128 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 GPR183P32249 361 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 SAA4P35542 130 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 C15orf32Q32M92 178 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 IGFL4Q6B9Z1 124 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 TIMM8BQ9Y5J9 83 aaPredicted RBP10.24□□□□□ -0.77
LDLR-203ENST00000535915 SMAD5-AS1Q9Y6J3 95 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 GATD1Q8NB37 220 aa10.24□□□□□ -0.77
LDLR-203ENST00000535915 FAM110DQ8TAY7 271 aaPredicted RBP10.24□□□□□ -0.77
LDLR-203ENST00000535915 ATP6V0E1O15342 81 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 OR5AL1P0C617 328 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 LYZL1Q6UWQ5 148 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 PRR25Q96S07 402 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 BPESC1Q9GZL8 116 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 HLA-DMBP28068 263 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 RHOGP84095 191 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 Q8TAT8 98 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 AJUBAQ96IF1 538 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 MAP1LC3CQ9BXW4 147 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 VPS13CQ709C8 3753 aa10.23□□□□□ -0.77
LDLR-203ENST00000535915 VGLL1Q99990 258 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 CELSR1Q9NYQ6 3014 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 H0Y8G0 127 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 CLEC3BP05452 202 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 ZNF502Q8TBZ5 544 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 AP5S1Q9NUS5 200 aa10.22□□□□□ -0.77
LDLR-203ENST00000535915 TMEM213A2RRL7 107 aa10.21□□□□□ -0.77
LDLR-203ENST00000535915 RPS20P60866 119 aaKnown RBP10.21□□□□□ -0.77
LDLR-203ENST00000535915 LMO4P61968 165 aa10.21□□□□□ -0.77
LDLR-203ENST00000535915 PRSS3P2Q8NHM4 247 aa10.21□□□□□ -0.77
LDLR-203ENST00000535915 HSPB8Q9UJY1 196 aa10.21□□□□□ -0.77
LDLR-203ENST00000535915 MUC21A0A0G2JKD1 596 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 MUC21A0A140T8X8 626 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 MPV17L2Q567V2 206 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 MUC21Q5SSG8 566 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 AMMECR1LQ6DCA0 310 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 ZNF493Q6ZR52 646 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 TMEM191AQ9H0A3 160 aa10.21□□□□□ -0.78
LDLR-203ENST00000535915 FBLL1A6NHQ2 334 aaKnown RBP10.2□□□□□ -0.78
LDLR-203ENST00000535915 IGHG4P01861 327 aa10.2□□□□□ -0.78
LDLR-203ENST00000535915 RIPPLY3P57055 190 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms