RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TSTD3H0UI37 97 aa9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 BRI3O95415 125 aa9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 SCGB1D1O95968 90 aa9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 IGKV2D-40P01614 121 aaPredicted RBP9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 FOXA3P55318 350 aaPredicted RBP9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 SRSF1Q07955 248 aaKnown RBP eCLIP9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 SIGLECL1Q8N7X8 197 aa9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 SLC50A1Q9BRV3 221 aa9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 ARL3P36405 182 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 C18orf32Q8TCD1 76 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 USMG5Q96IX5 58 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 J3QLI3 93 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 SMCPP49901 116 aaPredicted RBP9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 CRIP1P50238 77 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 KLF5Q13887 457 aaPredicted RBP9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 FAM162BQ5T6X4 162 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 Q6AWC8 147 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 IGFL4Q6B9Z1 124 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 LCN12Q6JVE5 192 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 COX8CQ7Z4L0 72 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 RCHY1Q96PM5 261 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 ALKBH7Q9BT30 221 aaPredicted RBP9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 NAGKQ9UJ70 344 aa9.98□□□□□ -0.81
SPTLC1-201ENST00000262554 IGHV3-66A0A0C4DH42 116 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 A0A1W2PS18 150 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 ZNF207O43670 478 aaKnown RBP9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 IGHG4P01861 327 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 GPX1P07203 203 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 HLA-DMBP28068 263 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 PPIFP30405 207 aaKnown RBP9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 BLCAPP62952 87 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 Q6ZWC4 215 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 PRR25Q96S07 402 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 U3KQE9 123 aa9.97□□□□□ -0.81
SPTLC1-201ENST00000262554 CSMD1Q96PZ7 3565 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 IGHV3OR16-13A0A075B7E8 117 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 A0A096LNT2 108 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 IGHV3-74A0A0B4J1X5 117 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 A0A1B0GUT8 65 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 ZNF705FA8MVS1 300 aaPredicted RBP9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 APOHP02749 345 aaPredicted RBP9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 AMTP48728 403 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 RIGQ13278 110 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 VGLL1Q99990 258 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 NDFIP1Q9BT67 221 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 SPG11Q96JI7 2443 aa9.96□□□□□ -0.81
SPTLC1-201ENST00000262554 TMEM189A5PLL7 270 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 RBAKDNA6NC62 111 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 SH2D1AO60880 128 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF324O75467 553 aaPredicted RBP9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 PF4V1P10720 104 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 BORCS7Q96B45 105 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 PRO1933Q9H354 126 aa9.96□□□□□ -0.82
SPTLC1-201ENST00000262554 MYO18BQ8IUG5 2567 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.95□□□□□ -0.824e-8■■■■□ 24.7
SPTLC1-201ENST00000262554 IGHV3-49A0A0A0MS15 119 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 A0A1B0GW15 77 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 NDUFA4O00483 81 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 TGFAP01135 160 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 PMCHP20382 165 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 BMI1P35226 326 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 Q8TAT8 98 aa9.95□□□□□ -0.82
SPTLC1-201ENST00000262554 A0A0G2JLM5 398 aa9.94□□□□□ -0.82
SPTLC1-201ENST00000262554 CTAG1AP78358 180 aa9.94□□□□□ -0.82
SPTLC1-201ENST00000262554 LOXL1Q08397 574 aaPredicted RBP9.94□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF664Q8N3J9 261 aa9.94□□□□□ -0.82
SPTLC1-201ENST00000262554 RNF182Q8N6D2 247 aa9.94□□□□□ -0.82
SPTLC1-201ENST00000262554 LOC102724200A0A096LPH7 203 aaPredicted RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 IGLV1-40P01703 118 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 ARMS2P0C7Q2 107 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF705DP0CH99 300 aaPredicted RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF705BP0CI00 300 aaPredicted RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 DDTP30046 118 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 RPS20P60866 119 aaKnown RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 DEFB112Q30KQ8 113 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 Q6ZS46 218 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 C8orf86Q6ZUL3 223 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 MRPL53Q96EL3 112 aaKnown RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 NRN1Q9NPD7 142 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 BEX4Q9NWD9 120 aaPredicted RBP9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF580Q9UK33 172 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 ZNF462Q96JM2 2506 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 HSBP1O75506 76 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 TRBV12-3P01733 135 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 IGHV3-11P01762 117 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 DEFA6Q01524 100 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 MAPK1IP1LQ8NDC0 245 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 OR4X2Q8NGF9 303 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 TPPP3Q9BW30 176 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 KLK15Q9H2R5 256 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 CLEC5AQ9NY25 188 aa9.93□□□□□ -0.82
SPTLC1-201ENST00000262554 CD33P20138 364 aa9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 NTF3P20783 257 aa9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 ERCC8Q13216 396 aa9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 PRR31Q5SQ13 230 aa9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 RNASEKQ6P5S7 137 aaKnown RBP9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 GATD1Q8NB37 220 aa9.92□□□□□ -0.82
SPTLC1-201ENST00000262554 GLMPQ8WWB7 406 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms