RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SBF1O95248 1867 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 CACNA1HO95180 2353 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 USP9YO00507 2555 aaPredicted RBP1.15□□□□□ -2.23
CD44-234ENST00000531873 XIRP2A4UGR9 3374 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 NBEAQ8NFP9 2946 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 NWD2Q9ULI1 1742 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 TRPM2O94759 1503 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 LMTK2Q8IWU2 1503 aa1.15□□□□□ -2.23
CD44-234ENST00000531873 RGPD3A6NKT7 1758 aaPredicted RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 RGPD4Q7Z3J3 1758 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 COL4A5P29400 1685 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 IGKV1D-42A0A075B6H8 117 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 TRBV19A0A075B6N1 114 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 HMGB3O15347 200 aaKnown RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 SULT1B1O43704 296 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 ZNF705BP0CI00 300 aaPredicted RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 GPX2P18283 190 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 S100A4P26447 101 aaKnown RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 PIGPP57054 158 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 RPL19P84098 196 aaKnown RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 ZNF846Q147U1 533 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 NDUFA5Q16718 116 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 ZNF826PQ6ZT77 177 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 EXOC3-AS1Q8N2X6 119 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 WFDC11Q8NEX6 87 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 OR8D4Q8NGM9 314 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 STAG3L4Q8TBR4 150 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 GPR146Q96CH1 333 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 HOPXQ9BPY8 73 aaPredicted RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 GINS4Q9BRT9 223 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 PRNDQ9UKY0 176 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 UTP11Q9Y3A2 253 aaKnown RBP1.14□□□□□ -2.23
CD44-234ENST00000531873 CEP192Q8TEP8 1941 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 PCLOQ9Y6V0 5065 aa1.14□□□□□ -2.23
CD44-234ENST00000531873 UBR2Q8IWV8 1755 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 HEATR1Q9H583 2144 aaKnown RBP1.13□□□□□ -2.23
CD44-234ENST00000531873 TLN2Q9Y4G6 2542 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 FMN2Q9NZ56 1722 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 C1orf196B1AJZ1 125 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 SDCBPO00560 298 aaPredicted RBP1.13□□□□□ -2.23
CD44-234ENST00000531873 OR5F1O95221 314 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 TCL1BO95988 128 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 GPX1P07203 203 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 OR4E1P0C645 316 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 UBBP0CG47 229 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 NEFHP12036 1026 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 COX6A1P12074 109 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 SPI1P17947 270 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 FKBP2P26885 142 aaKnown RBP1.13□□□□□ -2.23
CD44-234ENST00000531873 RHEBQ15382 184 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 DPPA3Q6W0C5 159 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 AAED1Q7RTV5 226 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 DEFB128Q7Z7B8 93 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 TMED4Q7Z7H5 227 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 TRAPPC6BQ86SZ2 158 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 YIPF3Q9GZM5 350 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 CST9LQ9H4G1 147 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 MED29Q9NX70 200 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 PYCARDQ9ULZ3 195 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 TNRC6AQ8NDV7 1962 aaKnown RBP1.13□□□□□ -2.23
CD44-234ENST00000531873 PAPPA2Q9BXP8 1791 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 DNHD1Q96M86 4753 aa1.13□□□□□ -2.23
CD44-234ENST00000531873 INO80Q9ULG1 1556 aaPredicted RBP1.13□□□□□ -2.23
CD44-234ENST00000531873 VWFP04275 2813 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 TRIOO75962 3097 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 PRDM2Q13029 1718 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 IGF2RP11717 2491 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 NRXN3Q9Y4C0 1643 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 COL14A1Q05707 1796 aaKnown RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 A0A087X0T9 212 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 E5RI56 91 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 J3QRK9 145 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 IFNA1P01562 189 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 RPSAP08865 295 aaKnown RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 RNASE4P34096 147 aaKnown RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 CRYBA4P53673 196 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 YPEL3P61236 119 aaPredicted RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 NCALDP61601 193 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 GNG5P63218 68 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 RRN3P1Q2M238 152 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 KHDC3LQ587J8 217 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 FP248Q71RG6 208 aaPredicted RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 SMIM20Q8N5G0 67 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 C3orf56Q8N813 242 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 OR4E2Q8NGC2 313 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 OR13D1Q8NGV5 346 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 MBD3L1Q8WWY6 194 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 AQP3Q92482 292 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 SLAMF6Q96DU3 332 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 GID8Q9NWU2 228 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 SS18L2Q9UHA2 77 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 EPDR1Q9UM22 224 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 NIPBLQ6KC79 2804 aaeCLIP1.12□□□□□ -2.23
CD44-234ENST00000531873 PLCH1Q4KWH8 1693 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 TROQ12816 1431 aaPredicted RBP1.12□□□□□ -2.23
CD44-234ENST00000531873 VPS13AQ96RL7 3174 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 PKD1L3Q7Z443 1732 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 NRAPQ86VF7 1730 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 PEAK1Q9H792 1746 aa1.12□□□□□ -2.23
CD44-234ENST00000531873 RELNP78509 3460 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms