RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GNLYP22749 145 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 RIGQ13278 110 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 SAPCD1Q5SSQ6 148 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 UNQ5815/PRO19632Q6UWF5 114 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 ZC2HC1AQ96GY0 325 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 NDFIP1Q9BT67 221 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 S4R3C0 116 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 KALRNO60229 2985 aa11.62□□□□□ -0.55
NUP54-217ENST00000514987 OR2T8A6NH00 312 aa11.61□□□□□ -0.55
NUP54-217ENST00000514987 FAM120AOSQ5T036 256 aa11.61□□□□□ -0.55
NUP54-217ENST00000514987 COX8CQ7Z4L0 72 aa11.61□□□□□ -0.55
NUP54-217ENST00000514987 CHCHD1Q96BP2 118 aaKnown RBP11.61□□□□□ -0.55
NUP54-217ENST00000514987 TMUB1Q9BVT8 246 aa11.61□□□□□ -0.55
NUP54-217ENST00000514987 SSBP4Q9BWG4 385 aaPredicted RBP11.61□□□□□ -0.55
NUP54-217ENST00000514987 DCHS1Q96JQ0 3298 aa11.61□□□□□ -0.55
NUP54-217ENST00000514987 CENPVL3A0A0U1RRI6 287 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 A0A1B0GUT8 65 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 NIT1Q86X76 327 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 GATD1Q8NB37 220 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 ZNF502Q8TBZ5 544 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 ATP6V0BQ99437 205 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 MIEN1Q9BRT3 115 aa11.6□□□□□ -0.55
NUP54-217ENST00000514987 LOC102724200A0A096LPH7 203 aaPredicted RBP11.59□□□□□ -0.55
NUP54-217ENST00000514987 SH2D7A6NKC9 451 aaPredicted RBP11.59□□□□□ -0.55
NUP54-217ENST00000514987 CD33P20138 364 aa11.59□□□□□ -0.55
NUP54-217ENST00000514987 NTF3P20783 257 aa11.59□□□□□ -0.55
NUP54-217ENST00000514987 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.58□□□□□ -0.55
NUP54-217ENST00000514987 TMEM8BA6NDV4 472 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 C19orf84I3L1E1 186 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 M0R2Z0 102 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 APOHP02749 345 aaPredicted RBP11.58□□□□□ -0.55
NUP54-217ENST00000514987 UQCRFS1P47985 274 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 RHOGP84095 191 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 PAX8Q06710 450 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 PMCHL1Q16048 86 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 C15orf32Q32M92 178 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 RNASEKQ6P5S7 137 aaKnown RBP11.58□□□□□ -0.55
NUP54-217ENST00000514987 Q8N976 141 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 EEF1AKMT3Q96AZ1 226 aa11.58□□□□□ -0.55
NUP54-217ENST00000514987 TRBV7-1A0A0A6YYK4 115 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 ZNF785A8K8V0 405 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 M0QZK8 103 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 M0R143 59 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 NDUFS8O00217 210 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 ATP6V0E1O15342 81 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 C3orf79P0CE67 100 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 RPS20P60866 119 aaKnown RBP11.58□□□□□ -0.56
NUP54-217ENST00000514987 PIMREGQ9BSJ6 248 aa11.58□□□□□ -0.56
NUP54-217ENST00000514987 A0A087X0K7 114 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 M0R3E3 92 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 IGHV3-23P01764 117 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 IGHV4-39P01824 125 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 ECSCRQ19T08 205 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 FAM19A2Q8N3H0 131 aa11.57□□□□□ -0.56
NUP54-217ENST00000514987 FAM181BA6NEQ2 426 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 ABCA1O95477 2261 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 OR5AL1P0C617 328 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 BMI1P35226 326 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 BCL6BQ8N143 479 aaPredicted RBP11.56□□□□□ -0.56
NUP54-217ENST00000514987 KLHDC1Q8N7A1 406 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 C5orf56Q8N8D9 126 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 MOB4Q9Y3A3 225 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 PAM16Q9Y3D7 125 aa11.56□□□□□ -0.56
NUP54-217ENST00000514987 C20orf202A1L168 122 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 TMEM189A5PLL7 270 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 BTF3P20290 206 aaKnown RBP11.55□□□□□ -0.56
NUP54-217ENST00000514987 GPR183P32249 361 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 CRIP1P50238 77 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 CRIP2P52943 208 aaPredicted RBP11.55□□□□□ -0.56
NUP54-217ENST00000514987 SRSF2Q01130 221 aaKnown RBP11.55□□□□□ -0.56
NUP54-217ENST00000514987 RELQ04864 619 aaPredicted RBP11.55□□□□□ -0.56
NUP54-217ENST00000514987 PIP4P2Q8N4L2 257 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 SLC50A1Q9BRV3 221 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 RNF114Q9Y508 228 aa11.55□□□□□ -0.56
NUP54-217ENST00000514987 SMG1Q96Q15 3661 aaKnown RBP11.55□□□□□ -0.56
NUP54-217ENST00000514987 IGHV1-69DA0A0B4J2H0 117 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 IGHV1-69P01742 117 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 CLEC3BP05452 202 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 LINC00614P0C842 121 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 ZNF705AQ6ZN79 300 aaPredicted RBP11.54□□□□□ -0.56
NUP54-217ENST00000514987 LINC00469Q8N7U9 141 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 PRR25Q96S07 402 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 ZFAND3Q9H8U3 227 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 SMAD5-AS1Q9Y6J3 95 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 HIVEP3Q5T1R4 2406 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 COL6A6A6NMZ7 2263 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 RBAKDNA6NC62 111 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 SSTP61278 116 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 TDRG1Q3Y452 100 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 CCL19Q99731 98 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 MEGF9Q9H1U4 602 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 ATRXP46100 2492 aa11.54□□□□□ -0.56
NUP54-217ENST00000514987 FAM223BA6NKX1 122 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 BUB3O43684 328 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 SH2D1AO60880 128 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 ARMS2P0C7Q2 107 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 CTRLP40313 264 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 ATP5G2Q06055 141 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 ZNF493Q6ZR52 646 aa11.53□□□□□ -0.56
NUP54-217ENST00000514987 FAM223AQ8IWN6 122 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms