RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ASCL5Q7RTU5 278 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 TRBV6-1A0A0K0K1D8 114 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.74□□□□□ -1.17
SS18-203ENST00000415083 TIMM23O14925 209 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 PAX8Q06710 450 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 SHANK2-AS3Q9BTD1 123 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 SCRT2Q9NQ03 307 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 CRYBG3Q68DQ2 2970 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 MUC21A0A0G2JKD1 596 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 MUC21A0A140T8X8 626 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 WI2-2373I1.2A0A1W2PRP0 233 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 KLRD1Q13241 179 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 MUC21Q5SSG8 566 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 LY6G5BQ8NDX9 201 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 LINC01560Q8TB33 94 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 FANCD2OSQ96PS1 177 aa7.74□□□□□ -1.17
SS18-203ENST00000415083 A0A087X0K7 114 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 PRRG2O14669 202 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 RBP4P02753 201 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 GFRALQ6UXV0 394 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 CHCHD1Q96BP2 118 aaKnown RBP7.73□□□□□ -1.17
SS18-203ENST00000415083 NGBQ9NPG2 151 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 LEPROTL1O95214 131 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 CHRDL1Q9BU40 450 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 CSMD2Q7Z408 3487 aa7.73□□□□□ -1.17
SS18-203ENST00000415083 C2orf91Q6ZV80 131 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 TNFRSF14Q92956 283 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 TPPP3Q9BW30 176 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 DYNLRB1Q9NP97 96 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 PPIAL4CA0A0B4J2A2 164 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 FAM231BA6NCW3 169 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 TAX1BP3O14907 124 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 PPIAL4GP0DN37 164 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 COL8A1P27658 744 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 APOBEC3AP31941 199 aaPredicted RBP7.72□□□□□ -1.17
SS18-203ENST00000415083 AMMECR1LQ6DCA0 310 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 TMEM75Q8N9X5 138 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 SMAD5-AS1Q9Y6J3 95 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 ABCA4P78363 2273 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 IGHV2-70DA0A0C4DH43 119 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 A0A1W2PRD5 423 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 A0A1W2PRF3 423 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 A0A1W2PRM7 423 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 GAS8-AS1O95177 125 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 ZNF80P51504 273 aaPredicted RBP7.72□□□□□ -1.17
SS18-203ENST00000415083 PSG8Q9UQ74 426 aa7.72□□□□□ -1.17
SS18-203ENST00000415083 TMEM213A2RRL7 107 aa7.71□□□□□ -1.17
SS18-203ENST00000415083 PSG3Q16557 428 aa7.71□□□□□ -1.17
SS18-203ENST00000415083 SOX21Q9Y651 276 aaPredicted RBP7.71□□□□□ -1.17
SS18-203ENST00000415083 EGR2P11161 476 aaPredicted RBP7.71□□□□□ -1.18
SS18-203ENST00000415083 FXYD7P58549 80 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 LINC01545Q5VT33 79 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 RASL11BQ9BPW5 248 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 ITPR1Q14643 2758 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 NDUFA3O95167 84 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 HLA-DRB1P01911 266 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 HLA-DMBP28068 263 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 BVES-AS1Q5T3Y7 98 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 IGFL4Q6B9Z1 124 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 NAA38Q9BRA0 125 aaKnown RBP7.71□□□□□ -1.18
SS18-203ENST00000415083 VPS25Q9BRG1 176 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 HILPDAQ9Y5L2 63 aa7.71□□□□□ -1.18
SS18-203ENST00000415083 CHEK1O14757 476 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 FGF6P10767 208 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 ZNF672Q499Z4 452 aaPredicted RBP7.7□□□□□ -1.18
SS18-203ENST00000415083 DAZAP1Q96EP5 407 aaKnown RBP7.7□□□□□ -1.18
SS18-203ENST00000415083 ZNF747Q9BV97 191 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 IGLV11-55A0A075B6I3 123 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 ODF3BA8MYP8 253 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 IGHV3-23P01764 117 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 IL4P05112 153 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 IFI27P40305 119 aaPredicted RBP7.7□□□□□ -1.18
SS18-203ENST00000415083 SLC25A34Q6PIV7 304 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 RNF125Q96EQ8 232 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 U3KQK5 164 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 ANKHD1Q8IWZ3 2542 aaKnown RBP7.7□□□□□ -1.18
SS18-203ENST00000415083 MUC6Q6W4X9 2439 aa7.7□□□□□ -1.18
SS18-203ENST00000415083 B9A039 149 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 UQCRFS1P47985 274 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 NPBQ8NG41 125 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 RPEQ96AT9 228 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 ST20Q9HBF5 79 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 A0A1B0GUT8 65 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 FCGR2BP31994 310 aaPredicted RBP7.69□□□□□ -1.18
SS18-203ENST00000415083 ZNF493Q6ZR52 646 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 AJUBAQ96IF1 538 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 PTPRQQ9UMZ3 2332 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 IGKV2-40A0A087WW87 121 aaPredicted RBP7.69□□□□□ -1.18
SS18-203ENST00000415083 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.69□□□□□ -1.18
SS18-203ENST00000415083 HSBP1L1C9JCN9 74 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 K7EP13 123 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 IGKV2D-40P01614 121 aaPredicted RBP7.69□□□□□ -1.18
SS18-203ENST00000415083 ARF6P62330 175 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 OR11H6Q8NGC7 330 aa7.69□□□□□ -1.18
SS18-203ENST00000415083 CACNA1BQ00975 2339 aa7.68□□□□□ -1.18
SS18-203ENST00000415083 LYZL1Q6UWQ5 148 aa7.68□□□□□ -1.18
SS18-203ENST00000415083 ONECUT1Q9UBC0 465 aa7.68□□□□□ -1.18
SS18-203ENST00000415083 LOC389332A0A1B0GUA5 103 aa7.68□□□□□ -1.18
SS18-203ENST00000415083 NBR2O15453 112 aa7.68□□□□□ -1.18
SS18-203ENST00000415083 HTR1DP28221 377 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms