RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 IGHV3-23P01764 117 aa14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 AMBPP02760 352 aa14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 CLEC3BP05452 202 aa14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 IL17RELQ6ZVW7 336 aa14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 SLC25A39Q9BZJ4 359 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 GNB4Q9HAV0 340 aa14.14□□□□□ -0.15
CCDC88C-203ENST00000389856 NBPF19A0A087WUL8 3843 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 PYYP10082 97 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 RAB9AP51151 201 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 CFHR3Q02985 330 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 JOSD1Q15040 202 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 PDZD11Q5EBL8 140 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 CLEC19AQ6UXS0 136 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 SHANK2-AS3Q9BTD1 123 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 KLF12Q9Y4X4 402 aa14.13□□□□□ -0.15
CCDC88C-203ENST00000389856 IGHG4P01861 327 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 TMEM183BQ1AE95 376 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 IBA57Q5T440 356 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 RASL11AQ6T310 242 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 RABAC1Q9UI14 185 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 EPDR1Q9UM22 224 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 SMIM27A0A1W2PRY6 76 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 SLC17A3O00476 420 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 NBEAP1P0C6P0 100 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 BPIFA4PQ86YQ2 179 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 C5orf17Q8NAS9 161 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 CCDC140Q96MF4 163 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 ZNF702PQ9H963 129 aa14.12□□□□□ -0.15
CCDC88C-203ENST00000389856 TEX15Q9BXT5 2789 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 H3BRN7 92 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 GP9P14770 177 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 OR5I1Q13606 314 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 Q6ZS46 218 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 BAGE2Q86Y30 109 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 Q8N2B8 174 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 GBGT1Q8N5D6 347 aa14.11□□□□□ -0.15
CCDC88C-203ENST00000389856 ELANEP08246 267 aa14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 MGST1P10620 155 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 FOSL1P15407 271 aa14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 ADMP35318 185 aa14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 ARL3P36405 182 aa14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 OR4F17Q8NGA8 305 aa14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 ZNF418Q8TF45 676 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 MRPL18Q9H0U6 180 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-203ENST00000389856 ZANQ9Y493 2812 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 SRD5A1P18405 259 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 UBE2G1P62253 170 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 FOXE3Q13461 319 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 GRAMD2BQ96HH9 432 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 FMC1Q96HJ9 113 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 ATG101Q9BSB4 218 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 OTORQ9NRC9 128 aa14.09□□□□□ -0.15
CCDC88C-203ENST00000389856 DNAJC9-AS1A6NH13 148 aa14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 SLC25A5P05141 298 aaKnown RBP14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 HIST1H1EP10412 219 aaKnown RBP14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 ESDP10768 282 aa14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 Q0VG73 95 aa14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 USF2Q15853 346 aaPredicted RBP14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 OR8I2Q8N0Y5 310 aa14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 JMJD8Q96S16 334 aa14.08□□□□□ -0.15
CCDC88C-203ENST00000389856 TRBV6-1A0A0K0K1D8 114 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 IZUMO1RA6ND01 250 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 PGPA6NDG6 321 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 LINC00587B1AMM8 73 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 GATCO43716 136 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 RPL7P18124 248 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 PSMB8P28062 276 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 PAFAH1B2P68402 229 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 TOMM20LQ6UXN7 152 aa14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 RNASE7Q9H1E1 156 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-203ENST00000389856 NOTCH2Q04721 2471 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 ZNF705GA8MUZ8 300 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 HLA-DQA1P01909 254 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 RANP62826 216 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 TMEM95Q3KNT9 176 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 OR4X2Q8NGF9 303 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 WIPF2Q8TF74 440 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 GPR82Q96P67 336 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 METTL26Q96S19 204 aa14.07□□□□□ -0.16
CCDC88C-203ENST00000389856 SNURFLB1AK76 121 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 NDUFA4O00483 81 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 CRISP2P16562 243 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 CBLN1P23435 193 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 PKIAP61925 76 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 LYPD1Q8N2G4 141 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 ZNF492Q9P255 531 aa14.06□□□□□ -0.16
CCDC88C-203ENST00000389856 CT83Q5H943 113 aa14.05□□□□□ -0.16
CCDC88C-203ENST00000389856 KLK15Q9H2R5 256 aa14.05□□□□□ -0.16
CCDC88C-203ENST00000389856 ZFAND3Q9H8U3 227 aa14.05□□□□□ -0.16
CCDC88C-203ENST00000389856 SERTAD4Q9NUC0 356 aa14.05□□□□□ -0.16
CCDC88C-203ENST00000389856 LEMD1Q68G75 181 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 BLNKQ8WV28 456 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 DUX5Q96PT3 197 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 Q9H3A6 140 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 PEF1Q9UBV8 284 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 MYO9AB2RTY4 2548 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 TSTD3H0UI37 97 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 LY6G6DO95868 133 aa14.04□□□□□ -0.16
CCDC88C-203ENST00000389856 TCRAP04437 139 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms