RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C1QL4Q86Z23 238 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 NKX6-2Q9C056 277 aaPredicted RBP14.16□□□□□ -0.14
CLN3-206ENST00000360019 Q9H3A6 140 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 TENM1Q9UKZ4 2725 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 ATRQ13535 2644 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 SIGLEC15Q6ZMC9 328 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 DPF1Q92782 380 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 RPUSD4Q96CM3 377 aaKnown RBP14.15□□□□□ -0.14
CLN3-206ENST00000360019 RAX2Q96IS3 184 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 A0A087X0K7 114 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 PDE6HQ13956 83 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 C11orf52Q96A22 123 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 DERL1Q9BUN8 251 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 RHPN1-AS1Q9BWJ2 59 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 PARLQ9H300 379 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 SMPXQ9UHP9 88 aa14.15□□□□□ -0.14
CLN3-206ENST00000360019 A0A1B0GUS0 222 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 A0A1W2PS18 150 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 PGPA6NDG6 321 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 ADARB2-AS1A8MUL3 147 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 CHEK1O14757 476 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 ATF4P18848 351 aaPredicted RBP14.14□□□□□ -0.15
CLN3-206ENST00000360019 GALR1P47211 349 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 FHL3Q13643 280 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 EXOC3-AS1Q8N2X6 119 aa14.14□□□□□ -0.15
CLN3-206ENST00000360019 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.13□□□□□ -0.15
CLN3-206ENST00000360019 OTORQ9NRC9 128 aa14.13□□□□□ -0.15
CLN3-206ENST00000360019 ZNF785A8K8V0 405 aa14.13□□□□□ -0.15
CLN3-206ENST00000360019 ZNF674Q2M3X9 581 aa14.13□□□□□ -0.15
CLN3-206ENST00000360019 DLX4Q92988 240 aaPredicted RBP14.13□□□□□ -0.15
CLN3-206ENST00000360019 GRAMD2BQ96HH9 432 aa14.13□□□□□ -0.15
CLN3-206ENST00000360019 CCL24O00175 119 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 SLC25A5P05141 298 aaKnown RBP14.12□□□□□ -0.15
CLN3-206ENST00000360019 GNG5P63218 68 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 LYPD1Q8N2G4 141 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 C2CD4CQ8TF44 421 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 SMIM7Q9BQ49 75 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 SELENOKQ9Y6D0 94 aa14.12□□□□□ -0.15
CLN3-206ENST00000360019 C2orf70A6NJV1 201 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 ZNF727A8MUV8 499 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 EPDR1Q9UM22 224 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 WNK1Q9H4A3 2382 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 ZNF253O75346 499 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 FOXL1Q12952 345 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 SVBPQ8N300 66 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 C5orf17Q8NAS9 161 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 TCEAL7Q9BRU2 100 aa14.11□□□□□ -0.15
CLN3-206ENST00000360019 ZNF331Q9NQX6 463 aaPredicted RBP14.11□□□□□ -0.15
CLN3-206ENST00000360019 PEX7O00628 323 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 CBLN1P23435 193 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 PSG9Q00887 426 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 IGFL4Q6B9Z1 124 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 ADAMTSL5Q6ZMM2 481 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 OR9G4Q8NGQ1 327 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 NIPSNAP3BQ9BS92 247 aa14.1□□□□□ -0.15
CLN3-206ENST00000360019 TRBV20OR9-2A0A075B6H5 130 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 M0R3E3 92 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 RPL35P42766 123 aaKnown RBP14.09□□□□□ -0.15
CLN3-206ENST00000360019 FAM74A3Q4VXF1 159 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 ATRAIDQ6UW56 229 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 HIST1H2BAQ96A08 127 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 LINC00479Q96M42 142 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 RPH3ALQ9UNE2 315 aa14.09□□□□□ -0.15
CLN3-206ENST00000360019 FBN1P35555 2871 aaKnown RBP14.08□□□□□ -0.15
CLN3-206ENST00000360019 FOLR2P14207 255 aa14.08□□□□□ -0.15
CLN3-206ENST00000360019 HLA-DMBP28068 263 aa14.08□□□□□ -0.15
CLN3-206ENST00000360019 NSUN5P1Q3KNT7 163 aa14.08□□□□□ -0.15
CLN3-206ENST00000360019 AAMDCQ9H7C9 122 aa14.08□□□□□ -0.15
CLN3-206ENST00000360019 HELTA6NFD8 242 aa14.08□□□□□ -0.16
CLN3-206ENST00000360019 TCRAP04437 139 aa14.08□□□□□ -0.16
CLN3-206ENST00000360019 PRB4P10163 310 aaPredicted RBP14.08□□□□□ -0.16
CLN3-206ENST00000360019 MEOX2P50222 304 aa14.08□□□□□ -0.16
CLN3-206ENST00000360019 NDUFA11Q86Y39 141 aa14.08□□□□□ -0.16
CLN3-206ENST00000360019 ATG101Q9BSB4 218 aa14.08□□□□□ -0.16
CLN3-206ENST00000360019 TRAV8-2A0A0B4J237 113 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 BMI1P35226 326 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 AWAT1Q58HT5 328 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 TCF24Q7RTU0 167 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 CMTM2Q8TAZ6 248 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 SLC50A1Q9BRV3 221 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 SDF2L1Q9HCN8 221 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 PEMTQ9UBM1 199 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 MLXQ9UH92 298 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 NAT8Q9UHE5 227 aa14.07□□□□□ -0.16
CLN3-206ENST00000360019 AKR1C3P42330 323 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 RPL11P62913 178 aaKnown RBP14.06□□□□□ -0.16
CLN3-206ENST00000360019 TMEM241Q24JQ0 296 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 CLRN3Q8NCR9 226 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 TVP23CQ96ET8 276 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 NRN1Q9NPD7 142 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 IGKV3-7A0A075B6H7 116 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 TRAV34A0A0B4J273 112 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 PGPEP1LA6NFU8 196 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 SOCS3O14543 225 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 KRTAP24-1Q3LI83 254 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 PRIMA1Q86XR5 153 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 RNF182Q8N6D2 247 aa14.06□□□□□ -0.16
CLN3-206ENST00000360019 ISLRO14498 428 aa14.05□□□□□ -0.16
CLN3-206ENST00000360019 SCO1O75880 301 aa14.05□□□□□ -0.16
CLN3-206ENST00000360019 SNAPINO95295 136 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms