RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PARD6GQ9BYG4 376 aaPredicted RBP13.16□□□□□ -0.3
CUX1-213ENST00000549414 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 C9JCJ5 164 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 NUDT3O95989 172 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 MSMPQ1L6U9 139 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 ASPHD1Q5U4P2 390 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 CRIP3Q6Q6R5 217 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 LOC102724200A0A096LPH7 203 aaPredicted RBP13.15□□□□□ -0.3
CUX1-213ENST00000549414 FOXL1Q12952 345 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 FER1L6-AS1Q8NA97 138 aa13.15□□□□□ -0.3
CUX1-213ENST00000549414 Q6ZPA2 131 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 OR5AN1Q8NGI8 311 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 TRGV9Q99603 122 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 TCRAP04437 139 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 ZNF114Q8NC26 417 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 Q8TAT8 98 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 WFDC12Q8WWY7 111 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 NPFFR1Q9GZQ6 430 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 NDUFA4L2Q9NRX3 87 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 JOSD1Q15040 202 aaPredicted RBP13.14□□□□□ -0.31
CUX1-213ENST00000549414 SLC25A34Q6PIV7 304 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 OR4X2Q8NGF9 303 aa13.14□□□□□ -0.31
CUX1-213ENST00000549414 C7orf71A4D174 169 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 TCF21O43680 179 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 NDUFS7O75251 213 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 SCGB1C2P0DMR2 95 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 TSKUQ8WUA8 353 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 ZMAT5Q9UDW3 170 aaKnown RBP13.13□□□□□ -0.31
CUX1-213ENST00000549414 C10orf91Q5T1B1 145 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 SRSF9Q13242 221 aaKnown RBP eCLIP13.13□□□□□ -0.31
CUX1-213ENST00000549414 FBLN7Q53RD9 439 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 CTSZQ9UBR2 303 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 RRN3P1Q2M238 152 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 FAM71F2Q6NXP2 309 aa13.13□□□□□ -0.31
CUX1-213ENST00000549414 NDPQ00604 133 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 TEX36Q5VZQ5 186 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 FAM159AQ6UWV7 190 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 Q71RC1 249 aaPredicted RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 ITLN2Q8WWU7 325 aaPredicted RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 FN1P02751 2386 aaKnown RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 FLNBO75369 2602 aaKnown RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 RNF223E7ERA6 249 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 H3BUX3 64 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 ZNF833PQ6ZTB9 187 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 ZNF329Q86UD4 541 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 SLX1AQ9BQ83 275 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 ZNF324O75467 553 aaPredicted RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 PFN1P07737 140 aaKnown RBP13.12□□□□□ -0.31
CUX1-213ENST00000549414 PRTN3P24158 256 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 SAA4P35542 130 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 GNB1LQ9BYB4 327 aa13.12□□□□□ -0.31
CUX1-213ENST00000549414 A0A0G2JLM5 398 aa13.11□□□□□ -0.31
CUX1-213ENST00000549414 FBLL1A6NHQ2 334 aaKnown RBP13.11□□□□□ -0.31
CUX1-213ENST00000549414 RAB37Q96AX2 223 aa13.11□□□□□ -0.31
CUX1-213ENST00000549414 FABP5P3A8MUU1 101 aa13.11□□□□□ -0.31
CUX1-213ENST00000549414 C3orf36Q3SXR2 165 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 B4DSR2 109 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 GGTLC3B5MD39 225 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 CEACAM4O75871 244 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 ORMDL3Q8N138 153 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 PRDM13Q9H4Q3 707 aa13.1□□□□□ -0.31
CUX1-213ENST00000549414 TRAV41A0A0B4J266 112 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 SNRPD3P62318 126 aaKnown RBP13.09□□□□□ -0.31
CUX1-213ENST00000549414 MTORP42345 2549 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 RNASE4P34096 147 aaKnown RBP13.09□□□□□ -0.31
CUX1-213ENST00000549414 PLA2G5P39877 138 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 RPL24P83731 157 aaKnown RBP13.09□□□□□ -0.31
CUX1-213ENST00000549414 ACTL10Q5JWF8 245 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 NUP35Q8NFH5 326 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 M0R1W7 72 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 GCSHP23434 173 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 EMP1P54849 157 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 ZNF56Q15929 161 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 ZNF414Q96IQ9 312 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 PRSS22Q9GZN4 317 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 RAX2Q96IS3 184 aa13.09□□□□□ -0.31
CUX1-213ENST00000549414 PAX8Q06710 450 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 RUSC1-AS1Q66K80 236 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 C5orf30Q96GV9 206 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 NUP210LQ5VU65 1888 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 NPFFO15130 113 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 RNF5Q99942 180 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 SOX21Q9Y651 276 aaPredicted RBP13.08□□□□□ -0.32
CUX1-213ENST00000549414 SHISA9B4DS77 424 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 LCN12Q6JVE5 192 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 LYPD6BQ8NI32 183 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 TMEM160Q9NX00 188 aa13.08□□□□□ -0.32
CUX1-213ENST00000549414 A6NDN8 102 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 ZNF138P52744 262 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 SSBP2P81877 361 aaPredicted RBP13.07□□□□□ -0.32
CUX1-213ENST00000549414 MINOS1Q5TGZ0 78 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 NIT1Q86X76 327 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 MINOS1-NBL1R4GNA1 71 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 HERVK_113P61574 105 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 NCOR1P1Q9H4R4 102 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 FAM181BA6NEQ2 426 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 C22orf46C9J442 243 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 NCR2O95944 276 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 EVI2AP22794 236 aa13.07□□□□□ -0.32
CUX1-213ENST00000549414 ERASQ7Z444 233 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms