RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ATG101Q9BSB4 218 aa10.8□□□□□ -0.68
CLSTN3-213ENST00000541953 CACFD1Q9UGQ2 172 aa10.8□□□□□ -0.68
CLSTN3-213ENST00000541953 LYRM9A8MSI8 78 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 F5H768 121 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 FABP1P07148 127 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 MEOX2P50222 304 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 ATP5IP56385 69 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 KIR3DS1Q14943 382 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 TMED4Q7Z7H5 227 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 DYNC2LI1Q8TCX1 351 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 SOSTQ9BQB4 213 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 SCP2D1Q9UJQ7 156 aa10.79□□□□□ -0.68
CLSTN3-213ENST00000541953 H3BRN7 92 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 WRBO00258 174 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 FAM3BP58499 235 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 RAB11AP62491 216 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 FGL1Q08830 312 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 ACOT7LQ6ZUV0 252 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 OR1B1Q8NGR6 318 aa10.78□□□□□ -0.68
CLSTN3-213ENST00000541953 BOLA2-SMG1P6H3BVE0 249 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 CCNKO75909 580 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 TSPOP30536 169 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 ZNF738Q8NE65 137 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 TRIM63Q969Q1 353 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 UHRF2Q96PU4 802 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 CCDC59Q9P031 241 aaKnown RBP10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 SLC45A2Q9UMX9 530 aa10.77□□□□□ -0.69
CLSTN3-213ENST00000541953 SYNGR2O43760 224 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 ANXA3P12429 323 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 TNFSF8P32971 234 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 KRTAP10-2P60368 255 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 SRPXP78539 464 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 HIST1H1AQ02539 215 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 AKR1C1Q04828 323 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 SPANXN5Q5MJ07 72 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 SAMD13Q5VXD3 122 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 GGNBP1Q5YKI7 109 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 GPR141Q7Z602 305 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 BPIFCQ8NFQ6 507 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 OR4D5Q8NGN0 318 aa10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 PARD6GQ9BYG4 376 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 SLIRPQ9GZT3 109 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-213ENST00000541953 DUXBA0A1W2PPF3 345 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 DUSP14O95147 198 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 HOXB5P09067 269 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 SNRPCP09234 159 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 HTN1P15515 57 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 VAMP1P23763 118 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 PPP1R1AQ13522 171 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 SSX7Q7RTT5 188 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 SPATA12Q7Z6I5 190 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 LRTM2Q8N967 370 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 OR8A1Q8NGG7 326 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 SCGB3A2Q96PL1 93 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 SHANK2-AS3Q9BTD1 123 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 TMEM147Q9BVK8 224 aa10.75□□□□□ -0.69
CLSTN3-213ENST00000541953 PMS2P5A8MQ11 134 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 ATP5G1P05496 136 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 SLC25A6P12236 298 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 CXCL3P19876 107 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 ATP5G3P48201 142 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 TMEM128Q5BJH2 165 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 CYP2G1PQ6ZSU1 146 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 Q8N1X5 172 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 LINC01587Q99440 93 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 MRPS26Q9BYN8 205 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 RABL2BQ9UNT1 228 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 VPS13BQ7Z7G8 4022 aa10.74□□□□□ -0.69
CLSTN3-213ENST00000541953 CBY3A6NI87 242 aa10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 MRPS12O15235 138 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 CFDP00746 253 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 PATE2Q6UY27 113 aa10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 RNASE8Q8TDE3 154 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 NOP10Q9NPE3 64 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-213ENST00000541953 SMCO3A2RU48 225 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 FABP12A6NFH5 140 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 ADAP1O75689 374 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 SFT2D2O95562 160 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 LINC00869P0C866 280 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 HOXA5P20719 270 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 CCL18P55774 89 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 POLR2GP62487 172 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 RHOBP62745 196 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 TMEM144Q7Z5S9 345 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 GPR82Q96P67 336 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 RABL2AQ9UBK7 228 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 RSL24D1Q9UHA3 163 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 HIGD1AQ9Y241 93 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 V9GYH0 126 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 MYCBP2O75592 4640 aa10.72□□□□□ -0.69
CLSTN3-213ENST00000541953 TRAV26-1A0A087WT03 109 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 A0A087X0K7 114 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 A0A0J9YY99 117 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 PRAC2D3DTV9 90 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 H3BTX0 84 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 MED6O75586 246 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 TAS2R60P59551 318 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 RRAS2P62070 204 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 PSG3Q16557 428 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 LINC00612Q8N6U2 182 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms