RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TEP1Q99973 2627 aaKnown RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 HSPG2P98160 4391 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 H3BRN7 92 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 HMGB3O15347 200 aaKnown RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 MPDU1O75352 247 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SNRPCP09234 159 aaKnown RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 PLA2G2AP14555 144 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 PRTN3P24158 256 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 S100GP29377 79 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 CDKN1AP38936 164 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 CTRLP40313 264 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 REG1BP48304 166 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 GNG10P50151 68 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 RPL31P62899 125 aaKnown RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 FLI1Q01543 452 aaPredicted RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 RBPJQ06330 500 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SPANXN5Q5MJ07 72 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 LCE1AQ5T7P2 110 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 OR8G2PQ6IF36 304 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 ZNF491Q8N8L2 437 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SLC24A4Q8NFF2 622 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 OR4X1Q8NH49 305 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 OR4S2Q8NH73 311 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 FAM213BQ8TBF2 198 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SPIN2AQ99865 258 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SPIN2BQ9BPZ2 258 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 TREM1Q9NP99 234 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SIRT7Q9NRC8 400 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 KCNIP2Q9NS61 270 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SLC39A9Q9NUM3 307 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 TMEM14CQ9P0S9 112 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 TCRBV4S1A1TA0A5B7 111 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 MAP1LC3B2A6NCE7 125 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 A8MTW9 85 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 F8W036 122 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 DFFBO76075 338 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 GOSR1O95249 250 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 IFNA17P01571 189 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 MT-ND4LP03901 98 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 CTSGP08311 255 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 IRF2P14316 349 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 GCHFRP30047 84 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 RAB4BP61018 213 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 MZT1Q08AG7 82 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 USF2Q15853 346 aaPredicted RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 RBPMS2Q6ZRY4 209 aaKnown RBP1.75□□□□□ -2.13
VPS54-202ENST00000354504 C9orf139Q6ZV77 190 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 FAM231DQ6ZW35 169 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 C16orf82Q7Z2V1 217 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 VMO1Q7Z5L0 202 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 FAM24BQ8N5W8 94 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 POM121L12Q8N7R1 296 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 C5orf56Q8N8D9 126 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 OR1B1Q8NGR6 318 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 C10orf105Q8TEF2 133 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 TRGV9Q99603 122 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 RNF5Q99942 180 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 NIPSNAP3BQ9BS92 247 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 C20orf24Q9BUV8 137 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 MAP1LC3BQ9GZQ8 125 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 SLC25A22Q9H936 323 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 LPAR2Q9HBW0 351 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 FUT9Q9Y231 359 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 ATRQ13535 2644 aa1.75□□□□□ -2.13
VPS54-202ENST00000354504 IGHV3-72A0A0B4J1Y9 119 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PPIAL4CA0A0B4J2A2 164 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SMCO3A2RU48 225 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 RNF212BA8MTL3 300 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 B4DEV8 164 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SNAPINO95295 136 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 FGF7P21781 194 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 IL3RAP26951 378 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 GAGE2BQ13066 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 GAGE2EQ4V326 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 FFAR4Q5NUL3 377 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 DNLZQ5SXM8 178 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 GAGE2AQ6NT46 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TMEM136Q6ZRR5 245 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 Q8N2B8 174 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 OR4C13Q8NGP0 309 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 OR1P1Q8NH06 330 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 ZNF502Q8TBZ5 544 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SFT2D1Q8WV19 159 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CACNG8Q8WXS5 425 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SLC35E1Q96K37 410 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 EIF5A2Q9GZV4 153 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 NPVFQ9HCQ7 196 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 GAGE2DQ9UEU5 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 MLXQ9UH92 298 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 INSIG2Q9Y5U4 225 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 U3KQK5 164 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 A0A087X0K7 114 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TRAV34A0A0B4J273 112 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 IGHV4-61A0A0C4DH41 118 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CORTO00230 105 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 ENSAO43768 121 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 IGHV3-48P01763 117 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 HLA-DRB1P01911 266 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 IGF1P05019 195 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PPIAL4GP0DN37 164 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms