RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 Q8WTZ3 238 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 WDR83OSQ9Y284 106 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 IGKV1D-37A0A075B6S9 117 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 ELANEP08246 267 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 CFHR3Q02985 330 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 FOXE3Q13461 319 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 PYY3Q5JQD4 70 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 TOMM20LQ6UXN7 152 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 OR1N2Q8NGR9 330 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 RPRMQ9NS64 109 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 TRBV9A0A0B4J1U6 114 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 CCL24O00175 119 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 SCAF4O95104 1147 aaKnown RBP7.08□□□□□ -1.28
USP4-202ENST00000351842 TSPAN15O95858 294 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 OR10G4Q8NGN3 311 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 OR10G9Q8NGN4 311 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 OR10G7Q8NGN6 311 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 OR1L6Q8NGR2 347 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 WFDC12Q8WWY7 111 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 TMEM231Q9H6L2 316 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 SLC39A9Q9NUM3 307 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 FAM223BA6NKX1 122 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 ZNF25P17030 456 aaPredicted RBP7.08□□□□□ -1.28
USP4-202ENST00000351842 PEA15Q15121 130 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 MIR17HGQ75NE6 70 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 LINC00305Q7Z4B0 112 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 FAM223AQ8IWN6 122 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 OR8I2Q8N0Y5 310 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 ZNF114Q8NC26 417 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 DLX4Q92988 240 aaPredicted RBP7.08□□□□□ -1.28
USP4-202ENST00000351842 RNF125Q96EQ8 232 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 RAX2Q96IS3 184 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 PRO1933Q9H354 126 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 GOLT1BQ9Y3E0 138 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 C17orf112F2Z3M2 114 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 PYYP10082 97 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 C1QL4Q86Z23 238 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 TMEM116Q8NCL8 245 aa7.08□□□□□ -1.28
USP4-202ENST00000351842 TSSC4Q9Y5U2 329 aaPredicted RBP7.08□□□□□ -1.28
USP4-202ENST00000351842 LGALS1P09382 135 aaKnown RBP7.07□□□□□ -1.28
USP4-202ENST00000351842 RHEBQ15382 184 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 C19orf54Q5BKX5 351 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 TMEM37Q8WXS4 190 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 TMEM158Q8WZ71 300 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 HIST1H2BAQ96A08 127 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 USMG5Q96IX5 58 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 SRSF8Q9BRL6 282 aaKnown RBP7.07□□□□□ -1.28
USP4-202ENST00000351842 DNHD1Q96M86 4753 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 TRBV7-1A0A0A6YYK4 115 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 UMAD1C9J7I0 102 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 MT-ND4LP03901 98 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 GUK1Q16774 197 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 ATP6V1FQ16864 119 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 C10orf113Q5VZT2 155 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 DPPA3Q6W0C5 159 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 Q8N2B8 174 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 UBE2E2Q96LR5 201 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 RABAC1Q9UI14 185 aa7.07□□□□□ -1.28
USP4-202ENST00000351842 TSTD3H0UI37 97 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 GGCTO75223 188 aaKnown RBP7.06□□□□□ -1.28
USP4-202ENST00000351842 HYPMO75409 117 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 SAP30O75446 220 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 SSX7Q7RTT5 188 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 ELOVL1Q9BW60 279 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 DEFB1P60022 68 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 PKIAP61925 76 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 FAM106AQ4KMX7 169 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 SPSB3Q6PJ21 355 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 STXBP6Q8NFX7 210 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 SGK494Q96LW2 274 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 TRAV1-1A0A0B4J248 108 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 ZNF343Q6P1L6 599 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 RPP25LQ8N5L8 163 aaKnown RBP7.06□□□□□ -1.28
USP4-202ENST00000351842 GATAD1Q8WUU5 269 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 ASCL2Q99929 193 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 PARD6GQ9BYG4 376 aaPredicted RBP7.06□□□□□ -1.28
USP4-202ENST00000351842 SLC35B3Q9H1N7 401 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 SLC45A2Q9UMX9 530 aa7.06□□□□□ -1.28
USP4-202ENST00000351842 LSM4Q9Y4Z0 139 aaKnown RBP7.06□□□□□ -1.28
USP4-202ENST00000351842 LINC01619G3V211 115 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 CIDEAO60543 219 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 SCGB2A1O75556 95 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 CDX1P47902 265 aaPredicted RBP7.05□□□□□ -1.28
USP4-202ENST00000351842 VN1R17PQ8TDU5 208 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 RAB24Q969Q5 203 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 GNPNAT1Q96EK6 184 aaPredicted RBP7.05□□□□□ -1.28
USP4-202ENST00000351842 HIGD1AQ9Y241 93 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 A0A087WWC5 75 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 C7orf77A4D0Y5 90 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 INS-IGF2F8WCM5 200 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 NDUFA7O95182 113 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 NPPCP23582 126 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 CDC34P49427 236 aaPredicted RBP7.05□□□□□ -1.28
USP4-202ENST00000351842 PMS2P11Q13670 270 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 HAGHQ16775 308 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 PATE2Q6UY27 113 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 DYNLRB2Q8TF09 96 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 C17orf77Q96MU5 243 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 METTL26Q96S19 204 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 DNAJC4Q9NNZ3 241 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms