RNA–Protein interactions for RNA: YPR025C

CCL1, Transcript of Cyclin associated with protein kinase Kin28p, yeast

Gene CCL1, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCL1	YPR025C	YNR071C	P53757	342 aa		4.61	□□□□□ -1.67
CCL1	YPR025C	MET14	Q02196	202 aa		4.61	□□□□□ -1.67
CCL1	YPR025C	EFR3	Q03653	782 aa	Known RBP	4.61	□□□□□ -1.67
CCL1	YPR025C	CEF1	Q03654	590 aa	Predicted RBP	4.61	□□□□□ -1.67
CCL1	YPR025C	ARR3	Q06598	404 aa		4.61	□□□□□ -1.67
CCL1	YPR025C	PSF3	Q12146	194 aa		4.61	□□□□□ -1.67
CCL1	YPR025C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CCL1	YPR025C	URA3	P03962	267 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	SEC12	P11655	471 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	ARG1	P22768	420 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	TGL1	P34163	548 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	YKL133C	P36066	463 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	YJL193W	P39542	402 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	THI6	P41835	540 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	DAK1	P54838	584 aa	Known RBP	4.6	□□□□□ -1.67
CCL1	YPR025C	MFM1	Q02783	413 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	TRS23	Q03784	219 aa		4.6	□□□□□ -1.67
CCL1	YPR025C	BMS1	Q08965	1183 aa	Known RBP	4.6	□□□□□ -1.67
CCL1	YPR025C	VAS1	P07806	1104 aa	Known RBP	4.59	□□□□□ -1.67
CCL1	YPR025C	GFA1	P14742	717 aa	Known RBP	4.59	□□□□□ -1.67
CCL1	YPR025C	VPS33	P20795	691 aa		4.59	□□□□□ -1.67
CCL1	YPR025C	CBP3	P21560	335 aa		4.59	□□□□□ -1.67
CCL1	YPR025C	DHR2	P36009	735 aa	Predicted RBP	4.59	□□□□□ -1.67
CCL1	YPR025C	PMT6	P42934	759 aa		4.59	□□□□□ -1.67
CCL1	YPR025C	CEG1	Q01159	459 aa	Predicted RBP	4.59	□□□□□ -1.67
CCL1	YPR025C	NGL2	Q03264	515 aa	Known RBP	4.59	□□□□□ -1.67
CCL1	YPR025C	ATP4	P05626	244 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	ADH4	P10127	382 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	YEF3	P16521	1044 aa	Known RBP	4.58	□□□□□ -1.68
CCL1	YPR025C	PTP2	P29461	750 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	CUE2	P36075	443 aa	Known RBP	4.58	□□□□□ -1.68
CCL1	YPR025C	YMC2	P38087	329 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	HIS6	P40545	261 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	PIP2	P52960	996 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	SUT2	Q12286	268 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	YOL114C	Q12322	202 aa		4.58	□□□□□ -1.68
CCL1	YPR025C	MDM20	Q12387	796 aa	Known RBP	4.58	□□□□□ -1.68
CCL1	YPR025C	DBP10	Q12389	995 aa	Known RBP	4.58	□□□□□ -1.68
CCL1	YPR025C	STE4	P18851	423 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	CAP1	P28495	268 aa	Known RBP	4.57	□□□□□ -1.68
CCL1	YPR025C	DSS4	P32601	143 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	EMP70	P32802	667 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	TAF5	P38129	798 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	NOP2	P40991	618 aa	Known RBP	4.57	□□□□□ -1.68
CCL1	YPR025C	QRI1	P43123	477 aa	Known RBP	4.57	□□□□□ -1.68
CCL1	YPR025C	TAN1	P53072	289 aa	Predicted RBP	4.57	□□□□□ -1.68
CCL1	YPR025C	YIP4	P53093	235 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	YDR179W-A	Q03983	463 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	MLC2	Q06580	163 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	YPL216W	Q08964	1102 aa		4.57	□□□□□ -1.68
CCL1	YPR025C	PHO5	P00635	467 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	CNE1	P27825	502 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	STB5	P38699	743 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	SWD1	P39706	426 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	PUS4	P48567	403 aa	Known RBP	4.56	□□□□□ -1.68
CCL1	YPR025C	BUD17	P53727	317 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	ARP7	Q12406	477 aa		4.56	□□□□□ -1.68
CCL1	YPR025C	STE12	P13574	688 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	RIM4	P38741	713 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	PIH1	P38768	344 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	MIT1	P40002	666 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	YIL166C	P40445	542 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	GSM1	P42950	618 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	TEP1	P53916	434 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	ACS1	Q01574	713 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	TRI1	Q05024	226 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	HOF1	Q05080	669 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	HIM1	Q06674	414 aa		4.55	□□□□□ -1.68
CCL1	YPR025C	BET2	P20133	325 aa		4.54	□□□□□ -1.68
CCL1	YPR025C	PMC1	P38929	1173 aa	Predicted RBP	4.54	□□□□□ -1.68
CCL1	YPR025C	YEL020C	P39994	560 aa		4.54	□□□□□ -1.68
CCL1	YPR025C	IMA5	P40884	581 aa		4.54	□□□□□ -1.68
CCL1	YPR025C	QRI7	P43122	407 aa		4.54	□□□□□ -1.68
CCL1	YPR025C	RTS3	P53289	263 aa		4.54	□□□□□ -1.68
CCL1	YPR025C	RPN13	O13563	156 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	RPA135	P22138	1203 aa	Known RBP	4.53	□□□□□ -1.68
CCL1	YPR025C	CCL1	P37366	393 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	MUP3	P38734	546 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	RRP8	P38961	392 aa	Known RBP	4.53	□□□□□ -1.68
CCL1	YPR025C	VFA1	P40080	203 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	TPM2	P40414	161 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	ATG36	P46983	293 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	MAD3	P47074	515 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	ASN1	P49089	572 aa	Known RBP	4.53	□□□□□ -1.68
CCL1	YPR025C	COS12	P53053	380 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	USA1	Q03714	838 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	YDL073W	Q07454	984 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	TGS1	Q12052	315 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	RRP6	Q12149	733 aa	Known RBP	4.53	□□□□□ -1.68
CCL1	YPR025C	ZPS1	Q12512	249 aa		4.53	□□□□□ -1.68
CCL1	YPR025C	TPK2	P06245	380 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	MSS18	P08593	268 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	SPO11	P23179	398 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	MSH1	P25846	959 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	PPZ2	P33329	710 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	YHL041W	P38730	149 aa		4.52	□□□□□ -1.69
CCL1	YPR025C	MOT3	P54785	490 aa	Known RBP	4.52	□□□□□ -1.69
CCL1	YPR025C	APM1	Q00776	475 aa	Predicted RBP	4.52	□□□□□ -1.69
CCL1	YPR025C	RPS15	Q01855	142 aa	Known RBP	4.52	□□□□□ -1.69
CCL1	YPR025C	SEC18	P18759	758 aa	Known RBP	4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms