RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeast

Gene SWM2, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWM2	YNR004W	VBA4	Q04602	768 aa	Known RBP	3.12	□□□□□ -1.91
SWM2	YNR004W	SCW10	Q04951	389 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	VHS3	Q08438	674 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	POM34	Q12445	299 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	TMA7	Q3E764	64 aa	Known RBP	3.12	□□□□□ -1.91
SWM2	YNR004W	ATP4	P05626	244 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	RPL7A	P05737	244 aa	Known RBP	3.11	□□□□□ -1.91
SWM2	YNR004W	SWI6	P09959	803 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
SWM2	YNR004W	MIH1	P23748	554 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	SRP68	P38687	599 aa	Known RBP	3.11	□□□□□ -1.91
SWM2	YNR004W	DED81	P38707	554 aa	Known RBP	3.11	□□□□□ -1.91
SWM2	YNR004W	GPG1	P53130	126 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	HOL1	P53389	586 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	ECM9	Q02202	377 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	CEF1	Q03654	590 aa	Predicted RBP	3.11	□□□□□ -1.91
SWM2	YNR004W	YFT2	Q06676	274 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	DCS2	Q12123	353 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	RPL7B	Q12213	244 aa	Known RBP	3.11	□□□□□ -1.91
SWM2	YNR004W	HER1	Q12276	1246 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	CRC1	Q12289	327 aa		3.11	□□□□□ -1.91
SWM2	YNR004W	YPR089W	O13585	888 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	SEC65	P29478	273 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	DGR2	P32330	852 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	RPC34	P32910	317 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	OAF3	P36023	863 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	COS111	P38308	924 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	GPP2	P40106	250 aa	Known RBP	3.1	□□□□□ -1.91
SWM2	YNR004W	YJL043W	P47053	257 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	IDP3	P53982	420 aa	Known RBP	3.1	□□□□□ -1.91
SWM2	YNR004W	LEE1	Q02799	301 aa	Known RBP	3.1	□□□□□ -1.91
SWM2	YNR004W	YHM2	Q04013	314 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	IZH3	Q07959	543 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	ZPS1	Q12512	249 aa		3.1	□□□□□ -1.91
SWM2	YNR004W	AQY1	P0CD91	305 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	KAR1	P11927	433 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	FRS1	P15624	595 aa	Known RBP	3.09	□□□□□ -1.91
SWM2	YNR004W	SDS22	P36047	338 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	GRX7	P38068	203 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	HXT6	P39003	570 aa	Known RBP	3.09	□□□□□ -1.91
SWM2	YNR004W	HXT7	P39004	570 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	NIT2	P47016	307 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	BRE5	P53741	515 aa	Known RBP	3.09	□□□□□ -1.91
SWM2	YNR004W	ARP4	P80428	489 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	HLR1	Q04429	423 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	ISA1	Q07821	250 aa	Predicted RBP	3.09	□□□□□ -1.91
SWM2	YNR004W	PEX15	Q08215	383 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	BUD7	Q08754	746 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	TMA17	Q12513	150 aa		3.09	□□□□□ -1.91
SWM2	YNR004W	YKL133C	P36066	463 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	PIH1	P38768	344 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	DUN1	P39009	513 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	THI6	P41835	540 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	TAN1	P53072	289 aa	Predicted RBP	3.08	□□□□□ -1.92
SWM2	YNR004W	PEX14	P53112	341 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	SPO1	P53541	631 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	FOL1	P53848	824 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	NOP15	P53927	220 aa	Predicted RBP	3.08	□□□□□ -1.92
SWM2	YNR004W	VMS1	Q04311	632 aa	Known RBP	3.08	□□□□□ -1.92
SWM2	YNR004W	TRI1	Q05024	226 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	YLR407W	Q06070	228 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	YTH1	Q06102	208 aa	Predicted RBP	3.08	□□□□□ -1.92
SWM2	YNR004W	AIM41	Q12032	185 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	YPR027C	Q12079	277 aa		3.08	□□□□□ -1.92
SWM2	YNR004W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	3.08	□□□□□ -1.92	not detected
SWM2	YNR004W	RPS17A	P02407	136 aa	Known RBP	3.07	□□□□□ -1.92
SWM2	YNR004W	RPS17B	P14127	136 aa	Known RBP	3.07	□□□□□ -1.92
SWM2	YNR004W	COX11	P19516	300 aa	Known RBP	3.07	□□□□□ -1.92
SWM2	YNR004W	DPB3	P27344	201 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	MF(ALPHA)2	P32435	120 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	YKU70	P32807	602 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	YPT7	P32939	208 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	NUG1	P40010	520 aa	Known RBP	3.07	□□□□□ -1.92
SWM2	YNR004W	IES1	P43579	692 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	BIT61	P47041	543 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	MRPL1	Q04599	285 aa		3.07	□□□□□ -1.92
SWM2	YNR004W	RPS9B	P05755	195 aa	Known RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	CWH43	P25618	953 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	MGM1	P32266	881 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	HEM12	P32347	362 aa	Predicted RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	ENP1	P38333	483 aa	Known RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	YMR124W	P39523	943 aa	Known RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	PEA2	P40091	420 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	RAD26	P40352	1085 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	FAF1	P40546	346 aa	Predicted RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	BST1	P43571	1029 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	TAF4	P50105	388 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	CNM67	P53865	581 aa	Known RBP	3.06	□□□□□ -1.92
SWM2	YNR004W	COG6	P53959	839 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	FDC1	Q03034	503 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	SLX4	Q12098	748 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	VPS5	Q92331	675 aa		3.06	□□□□□ -1.92
SWM2	YNR004W	SEC3	P33332	1336 aa	Known RBP	3.05	□□□□□ -1.92
SWM2	YNR004W	CPA2	P03965	1118 aa	Known RBP	3.05	□□□□□ -1.92
SWM2	YNR004W	SEC12	P11655	471 aa		3.05	□□□□□ -1.92
SWM2	YNR004W	HOP1	P20050	605 aa		3.05	□□□□□ -1.92
SWM2	YNR004W	IMG2	P25642	146 aa	Predicted RBP	3.05	□□□□□ -1.92
SWM2	YNR004W	DHR2	P36009	735 aa	Predicted RBP	3.05	□□□□□ -1.92
SWM2	YNR004W	PEF1	P53238	335 aa		3.05	□□□□□ -1.92
SWM2	YNR004W	BSP1	Q06604	576 aa		3.05	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms