RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	SIR3	P06701	978 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	LAT1	P12695	482 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	2.66	□□□□□ -1.98	not detected
SNU114	YKL173W	CAD1	P24813	409 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	SUL1	P38359	859 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	RIC1	P40395	1056 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TMA108	P40462	946 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	IML2	P47031	731 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TAN1	P53072	289 aa	Predicted RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	DLT1	Q04216	342 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	VID22	Q05934	901 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	RGC1	Q06108	1083 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	MCH5	Q08777	521 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	ATG11	Q12527	1178 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-H	O13535	1793 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-DR5	P0C2I2	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-DR6	P0C2I3	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-LR2	P0C2I5	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-PR2	P0C2J0	1756 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-JR1	P47098	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-ML2	Q03434	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-ER1	Q03612	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-ML1	Q04711	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-GR2	Q12269	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-OL	Q12273	1755 aa		2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-PL	Q12414	1755 aa	Known RBP	2.66	□□□□□ -1.98
SNU114	YKL173W	TY1B-NL2	Q99337	1749 aa	Known RBP	2.65	□□□□□ -1.98
SNU114	YKL173W	RPS9A	O13516	197 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	HOM3	P10869	527 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	PHO81	P17442	1178 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	MSH1	P25846	959 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	PAH1	P32567	862 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	FRD1	P32614	470 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	BCD1	P38772	366 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	QRI1	P43123	477 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	SET2	P46995	733 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	MUP1	P50276	574 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	TEX1	P53851	422 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	TIM10	P87108	93 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	ARG5,6	Q01217	863 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	MUK1	Q02866	612 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	TMN2	Q04562	672 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	RVB2	Q12464	471 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	XRN1	P22147	1528 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	MCM3	P24279	971 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	TGL1	P34163	548 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	CDS1	P38221	457 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	NOP16	P40007	231 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	YER010C	P40011	234 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	YFL052W	P43551	465 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	SRB7	P47822	140 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	YDL183C	P48569	320 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	SSL2	Q00578	843 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	PKH1	Q03407	766 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	GIS1	Q03833	894 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	TDA9	Q04545	1251 aa		2.65	□□□□□ -1.99
SNU114	YKL173W	VIP1	Q06685	1146 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	DBP10	Q12389	995 aa	Known RBP	2.65	□□□□□ -1.99
SNU114	YKL173W	DNF3	Q12674	1656 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	RPS17A	P02407	136 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	RPS17B	P14127	136 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	SPO16	P17122	198 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	ADE2	P21264	571 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	UBC1	P21734	215 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	RER1	P25560	188 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	YBR259W	P38338	688 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	YHR112C	P38716	378 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	LYS9	P38999	446 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	PZF1	P39933	429 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	FAF1	P40546	346 aa	Predicted RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	RMD8	P43620	662 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	STB4	P50104	949 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	UBC11	P52492	156 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	RSC1	P53236	928 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	GRX3	Q03835	250 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	EDE1	P34216	1381 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	VAS1	P07806	1104 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	CBP3	P21560	335 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	SWI4	P25302	1093 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	ECM32	P32644	1121 aa	Known RBP	2.64	□□□□□ -1.99
SNU114	YKL173W	SAP190	P36123	1033 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	PPS1	P38148	807 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	FMP10	P40098	244 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	BUD8	P41698	603 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	SMK1	P41808	388 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	FKH2	P41813	862 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	PUS2	P53167	370 aa		2.64	□□□□□ -1.99
SNU114	YKL173W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	2.64	□□□□□ -1.99	not detected
SNU114	YKL173W	CAF20	P12962	161 aa	Known RBP	2.63	□□□□□ -1.99
SNU114	YKL173W	YIR042C	P40586	236 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	IRC6	P43615	237 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	SGM1	P47166	707 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	CTF18	P49956	741 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	ACF2	Q12168	779 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	PCD1	Q12524	340 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	SPO14	P36126	1683 aa		2.63	□□□□□ -1.99
SNU114	YKL173W	NGG1	P32494	702 aa		2.63	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 139.7 ms