RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ANP32BQ92688 251 aaKnown RBP24.94■■□□□ 1.58
LIME1-210ENST00000621325 FTOQ9C0B1 505 aaKnown RBP eCLIP24.94■■□□□ 1.582e-7■□□□□ 8.6
LIME1-210ENST00000621325 TFCP2L1Q9NZI6 479 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 NPHP1O15259 732 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 TDO2P48775 406 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 CEBPZQ03701 1054 aaKnown RBP24.94■■□□□ 1.58
LIME1-210ENST00000621325 NFIXQ14938 502 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 STK11IPQ8N1F8 1099 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 PGBD1Q96JS3 809 aa24.93■■□□□ 1.58
LIME1-210ENST00000621325 BCL11BQ9C0K0 894 aaPredicted RBP24.93■■□□□ 1.58
LIME1-210ENST00000621325 C4AP0C0L4 1744 aa24.93■■□□□ 1.58
LIME1-210ENST00000621325 FBXO33Q7Z6M2 555 aa24.93■■□□□ 1.58
LIME1-210ENST00000621325 IGDCC4Q8TDY8 1250 aa24.93■■□□□ 1.58
LIME1-210ENST00000621325 KDM4AO75164 1064 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 ZNF384Q8TF68 577 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 SDR42E1Q8WUS8 393 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 GJB4Q9NTQ9 266 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 ZSWIM5Q9P217 1185 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 GNAT2P19087 354 aa24.92■■□□□ 1.58
LIME1-210ENST00000621325 ILDR1Q86SU0 546 aaPredicted RBP24.92■■□□□ 1.58
LIME1-210ENST00000621325 CPLX1O14810 134 aa24.91■■□□□ 1.58
LIME1-210ENST00000621325 DHX16O60231 1041 aaKnown RBP24.91■■□□□ 1.58
LIME1-210ENST00000621325 AKNAD1Q5T1N1 836 aa24.91■■□□□ 1.58
LIME1-210ENST00000621325 CHMP4CQ96CF2 233 aa24.91■■□□□ 1.58
LIME1-210ENST00000621325 NACAP1Q9BZK3 213 aa24.91■■□□□ 1.58
LIME1-210ENST00000621325 ORC3Q9UBD5 711 aaPredicted RBP24.91■■□□□ 1.58
LIME1-210ENST00000621325 TNRC6CQ9HCJ0 1690 aaKnown RBP24.91■■□□□ 1.58
LIME1-210ENST00000621325 SMIM22K7EJ46 135 aa24.91■■□□□ 1.58
LIME1-210ENST00000621325 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.9■■□□□ 1.58
LIME1-210ENST00000621325 APOA5Q6Q788 366 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 TXNRD3Q86VQ6 643 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 QTRT2Q9H974 415 aaKnown RBP24.9■■□□□ 1.58
LIME1-210ENST00000621325 LY9Q9HBG7 655 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 MAGEB6P1A0A0J9YX57 407 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 GOLGA6L4A6NEF3 574 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 LETM1O95202 739 aaPredicted RBP24.9■■□□□ 1.58
LIME1-210ENST00000621325 RRP12Q5JTH9 1297 aaKnown RBP24.9■■□□□ 1.58
LIME1-210ENST00000621325 CCDC144CPQ8IYA2 1237 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 TRIM44Q96DX7 344 aaPredicted RBP24.9■■□□□ 1.58
LIME1-210ENST00000621325 MYL10Q9BUA6 226 aa24.9■■□□□ 1.58
LIME1-210ENST00000621325 DYNLL1P63167 89 aaKnown RBP24.89■■□□□ 1.58
LIME1-210ENST00000621325 TMEM67Q5HYA8 995 aa24.89■■□□□ 1.58
LIME1-210ENST00000621325 MFSD6Q6ZSS7 791 aa24.89■■□□□ 1.58
LIME1-210ENST00000621325 MICU3Q86XE3 530 aa24.89■■□□□ 1.58
LIME1-210ENST00000621325 TMEM87BQ96K49 555 aa24.89■■□□□ 1.58
LIME1-210ENST00000621325 RIOK1Q9BRS2 568 aaKnown RBP24.89■■□□□ 1.58
LIME1-210ENST00000621325 CDC27P30260 824 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 METAP2P50579 478 aaKnown RBP eCLIP24.88■■□□□ 1.57
LIME1-210ENST00000621325 ANKRD2Q9GZV1 360 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 CACNA1SQ13698 1873 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 USP28Q96RU2 1077 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 FUCA2Q9BTY2 467 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 TOMM22Q9NS69 142 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 DACT1Q9NYF0 836 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 CFAP45Q9UL16 551 aa24.88■■□□□ 1.57
LIME1-210ENST00000621325 HIBADHP31937 336 aaKnown RBP24.87■■□□□ 1.57
LIME1-210ENST00000621325 CAMK4Q16566 473 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 NFXL1Q6ZNB6 911 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 C8orf76Q96K31 380 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 ZKSCAN3Q9BRR0 538 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 JAG2Q9Y219 1238 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 IFIT3O14879 490 aaKnown RBP24.87■■□□□ 1.57
LIME1-210ENST00000621325 CNBD1Q8NA66 436 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 STAG1Q8WVM7 1258 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 PDCL3Q9H2J4 239 aa24.87■■□□□ 1.57
LIME1-210ENST00000621325 AIFM3Q96NN9 605 aa24.86■■□□□ 1.57
LIME1-210ENST00000621325 CHAF1AQ13111 956 aaPredicted RBP24.86■■□□□ 1.57
LIME1-210ENST00000621325 PDLIM2Q96JY6 352 aa24.86■■□□□ 1.57
LIME1-210ENST00000621325 CNNM2Q9H8M5 875 aa24.86■■□□□ 1.57
LIME1-210ENST00000621325 CHD4Q14839 1912 aa24.86■■□□□ 1.57
LIME1-210ENST00000621325 TIAM2Q8IVF5 1701 aa24.86■■□□□ 1.57
LIME1-210ENST00000621325 MINDY4BA8MYZ0 360 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 PPARAQ07869 468 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 SGMS1Q86VZ5 419 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 FBXO18Q8NFZ0 1043 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 BICD2Q8TD16 824 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 KRT23Q9C075 422 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 ZBTB43O43298 467 aa24.85■■□□□ 1.57
LIME1-210ENST00000621325 FAM217BQ9NTX9 383 aaPredicted RBP24.85■■□□□ 1.57
LIME1-210ENST00000621325 NR1I2O75469 434 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 PHKBQ93100 1093 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 NUP62CLQ9H1M0 184 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 RCOR1Q9UKL0 485 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 SEMA3EO15041 775 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 MECOMQ03112 1051 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 PRR5LQ6MZQ0 368 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 NSUN4Q96CB9 384 aaKnown RBP24.84■■□□□ 1.57
LIME1-210ENST00000621325 TAOK2Q9UL54 1235 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 MYH15Q9Y2K3 1946 aa24.84■■□□□ 1.57
LIME1-210ENST00000621325 CYP2D7A0A087X1C5 515 aa24.83■■□□□ 1.57
LIME1-210ENST00000621325 PRDX5P30044 214 aa24.83■■□□□ 1.57
LIME1-210ENST00000621325 LIFRP42702 1097 aa24.83■■□□□ 1.57
LIME1-210ENST00000621325 IRS2Q9Y4H2 1338 aa24.83■■□□□ 1.57
LIME1-210ENST00000621325 TRIM37O94972 964 aa24.83■■□□□ 1.56
LIME1-210ENST00000621325 POLR3DP05423 398 aaPredicted RBP24.83■■□□□ 1.56
LIME1-210ENST00000621325 GYS1P13807 737 aa24.83■■□□□ 1.56
LIME1-210ENST00000621325 GOLGA8AA7E2F4 631 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 SLC12A7Q9Y666 1083 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 KIF28PB7ZC32 967 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 UBE2Q2LH0YL09 131 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms