RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ZNF594Q96JF6 807 aaPredicted RBP10.18□□□□□ -0.78
NEDD8-207ENST00000533242 TMEM39BQ9GZU3 492 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 MGAMO43451 1857 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 TLR2O60603 784 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 LACTBP83111 547 aaPredicted RBP10.17□□□□□ -0.78
NEDD8-207ENST00000533242 HDLBPQ00341 1268 aaKnown RBP10.17□□□□□ -0.78
NEDD8-207ENST00000533242 MAPK8IP2Q13387 824 aaPredicted RBP10.17□□□□□ -0.78
NEDD8-207ENST00000533242 BEND3Q5T5X7 828 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 BCL11AQ9H165 835 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 SNCAIPQ9Y6H5 919 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 EPHA10Q5JZY3 1008 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 ERO1BQ86YB8 467 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 FTSJ3Q8IY81 847 aaKnown RBP10.17□□□□□ -0.78
NEDD8-207ENST00000533242 TMEM57Q8N5G2 664 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 SH3TC2Q8TF17 1288 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 HOOK2Q96ED9 719 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 DDRGK1Q96HY6 314 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 MYH13Q9UKX3 1938 aa10.17□□□□□ -0.78
NEDD8-207ENST00000533242 GYG1P46976 350 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 PPIL2Q13356 520 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 SNAPC2Q13487 334 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 ATF7IPQ6VMQ6 1270 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 FAM84BQ96KN1 310 aaPredicted RBP10.16□□□□□ -0.78
NEDD8-207ENST00000533242 ARHGAP39Q9C0H5 1083 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 BTBD19C9JJ37 291 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 VAMP4O75379 141 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 ITPRIPQ8IWB1 547 aa10.16□□□□□ -0.78
NEDD8-207ENST00000533242 RPAP1Q9BWH6 1393 aaPredicted RBP10.15□□□□□ -0.78
NEDD8-207ENST00000533242 GRM8O00222 908 aa10.15□□□□□ -0.78
NEDD8-207ENST00000533242 CT47B1P0C2W7 299 aaPredicted RBP10.15□□□□□ -0.78
NEDD8-207ENST00000533242 FAM83AQ86UY5 434 aa10.15□□□□□ -0.78
NEDD8-207ENST00000533242 TBC1D22AQ8WUA7 517 aa10.15□□□□□ -0.78
NEDD8-207ENST00000533242 MRIQ9BWK5 157 aa10.15□□□□□ -0.78
NEDD8-207ENST00000533242 F6X3S4 739 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 MYCP01106 439 aaPredicted RBP10.15□□□□□ -0.79
NEDD8-207ENST00000533242 FKBP1CQ5VVH2 108 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 DCAF15Q66K64 600 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 FBXO33Q7Z6M2 555 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 NKX2-3Q8TAU0 364 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 TEKT1Q969V4 418 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 SHISA4Q96DD7 197 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 TMOD2Q9NZR1 351 aa10.15□□□□□ -0.79
NEDD8-207ENST00000533242 MROH5Q6ZUA9 1318 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 ALDH1L1O75891 902 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 HOXD10P28358 340 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 GRIK5Q16478 980 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 C17orf99Q6UX52 265 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 CHRDL2Q6WN34 429 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 ANKRD23Q86SG2 305 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 ZDHHC15Q96MV8 337 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 WRNIP1Q96S55 665 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 SRRDQ9UH36 339 aa10.14□□□□□ -0.79
NEDD8-207ENST00000533242 IRF6O14896 467 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 PPATQ06203 517 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 ZNF341Q9BYN7 854 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 C9orf78Q9NZ63 289 aaPredicted RBP10.13□□□□□ -0.79
NEDD8-207ENST00000533242 AK9Q5TCS8 1911 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 MAST3O60307 1309 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 ADGRA2Q96PE1 1338 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 CHAF1AQ13111 956 aaPredicted RBP10.13□□□□□ -0.79
NEDD8-207ENST00000533242 AAMPQ13685 434 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 DPF3Q92784 378 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 ZKSCAN4Q969J2 545 aaPredicted RBP10.13□□□□□ -0.79
NEDD8-207ENST00000533242 HTATIP2Q9BUP3 242 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 PUS3Q9BZE2 481 aaKnown RBP10.13□□□□□ -0.79
NEDD8-207ENST00000533242 RWDD1Q9H446 243 aaPredicted RBP10.13□□□□□ -0.79
NEDD8-207ENST00000533242 ZBTB40Q9NUA8 1239 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 SUGT1Q9Y2Z0 365 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 RIPOR2Q9Y4F9 1068 aa10.13□□□□□ -0.79
NEDD8-207ENST00000533242 PSMC4P43686 418 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 CACNB3P54284 484 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 MTFR1Q15390 333 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 VPS37DQ86XT2 251 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 TRIM47Q96LD4 638 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 DOCK2Q92608 1830 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 GJB1P08034 283 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 OSBPP22059 807 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 CTGFP29279 349 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 GRK4P32298 578 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 GJA8P48165 433 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 NFKBIBQ15653 356 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 CAVIN4Q5BKX8 364 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 UBE2Q1Q7Z7E8 422 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 RAET1EQ8TD07 263 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 RBM27Q9P2N5 1060 aaKnown RBP10.12□□□□□ -0.79
NEDD8-207ENST00000533242 CPA4Q9UI42 421 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 KCNH4Q9UQ05 1017 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 MYPNQ86TC9 1320 aa10.12□□□□□ -0.79
NEDD8-207ENST00000533242 PDHXO00330 501 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 CCL5P13501 91 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 APOBEC3HQ6NTF7 200 aaKnown RBP10.11□□□□□ -0.79
NEDD8-207ENST00000533242 HHIPL2Q6UWX4 724 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 SUCLG2Q96I99 432 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 SRCIN1Q9C0H9 1055 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 PRO3102Q9H379 93 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 ZNF112Q9UJU3 913 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 DDX19BQ9UMR2 479 aa10.11□□□□□ -0.79
NEDD8-207ENST00000533242 IQSEC3Q9UPP2 1182 aaPredicted RBP10.11□□□□□ -0.79
NEDD8-207ENST00000533242 FRAT2O75474 233 aaPredicted RBP10.11□□□□□ -0.79
NEDD8-207ENST00000533242 FMNL1O95466 1100 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms