RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ECHDC1Q9NTX5 307 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 NUB1Q9Y5A7 615 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 ZFXP17010 805 aaPredicted RBP17.01■□□□□ 0.31
COL5A1-201ENST00000371817 TATP17735 454 aaPredicted RBP17.01■□□□□ 0.31
COL5A1-201ENST00000371817 ZNF75DP51815 510 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 SECISBP2LQ93073 1101 aaKnown RBP17.01■□□□□ 0.31
COL5A1-201ENST00000371817 ATP1A2P50993 1020 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 ZNF445P59923 1031 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 SND1Q7KZF4 910 aaKnown RBP eCLIP17.01■□□□□ 0.31
COL5A1-201ENST00000371817 C17orf53Q8N3J3 647 aaPredicted RBP17.01■□□□□ 0.31
COL5A1-201ENST00000371817 IWS1Q96ST2 819 aa17.01■□□□□ 0.31
COL5A1-201ENST00000371817 AMOTQ4VCS5 1084 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 CCDC93Q567U6 631 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 EFCAB8A8MWE9 144 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 PPARDQ03181 441 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 CCDC184Q52MB2 194 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 SAAL1Q96ER3 474 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 CTTNBP2NLQ9P2B4 639 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 FAM13AO94988 1023 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 STX17P56962 302 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 CFAP61Q8NHU2 1237 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 KIFAP3Q92845 792 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 ASIC3Q9UHC3 531 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 ARHGAP4P98171 946 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 TMTC2Q8N394 836 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 RAD54L2Q9Y4B4 1467 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 TRIM31Q9BZY9 425 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 CCDC68Q9H2F9 335 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 TMOD2Q9NZR1 351 aa17■□□□□ 0.31
COL5A1-201ENST00000371817 ZRANB1Q9UGI0 708 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 TBC1D8O95759 1140 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 BRAPQ7Z569 592 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 CCDC8Q9H0W5 538 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-201ENST00000371817 LMNB2Q03252 620 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 ZNF530Q6P9A1 599 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-201ENST00000371817 NUDCD3Q8IVD9 361 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 NLRP7Q8WX94 980 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 IFT88Q13099 833 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL5A1-201ENST00000371817 CCDC89Q8N998 374 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 FAM204AQ9H8W3 233 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 NUP58Q9BVL2 599 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 ZNF500O60304 480 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-201ENST00000371817 SKIP12755 728 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 RASA3Q14644 834 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 GRAMD4Q6IC98 578 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 TMTC1Q8IUR5 882 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 SYCE1Q8N0S2 351 aa16.99■□□□□ 0.31
COL5A1-201ENST00000371817 PALM3A6NDB9 673 aaPredicted RBP16.98■□□□□ 0.31
COL5A1-201ENST00000371817 SUN1O94901 812 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 WTAPQ15007 396 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 P3H4Q92791 437 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 TRIM6Q9C030 488 aaPredicted RBP16.98■□□□□ 0.31
COL5A1-201ENST00000371817 LRRC9Q6ZRR7 1453 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 KLF18A0A0U1RQI7 1052 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 GNAT3A8MTJ3 354 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 TRIM75PA6NK02 468 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 KRT3P12035 628 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 SDSP20132 328 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 E2F5Q15329 346 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 RTN1Q16799 776 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 KLHL34Q8N239 644 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 KIFC2Q96AC6 838 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 SAR1BQ9Y6B6 198 aa16.98■□□□□ 0.31
COL5A1-201ENST00000371817 WDR46O15213 610 aaKnown RBP16.97■□□□□ 0.31
COL5A1-201ENST00000371817 HDAC1Q13547 482 aaPredicted RBP16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ICE2Q659A1 982 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 A0A087WUV0 522 aaPredicted RBP16.97■□□□□ 0.31
COL5A1-201ENST00000371817 PIK3R5Q8WYR1 880 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 HS2ST1Q7LGA3 356 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 PPP1R2P41236 205 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ANKRD50Q9ULJ7 1429 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 RAPGEF1Q13905 1077 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 SLMAPQ14BN4 828 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 KRT23Q9C075 422 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 SLC5A1P13866 664 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 RPS6KA2Q15349 733 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 Q6ZUG5 572 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 STK10O94804 968 aaKnown RBP16.97■□□□□ 0.31
COL5A1-201ENST00000371817 RAP1GDS1P52306 607 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ANKRD20A4Q4UJ75 823 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ANKRD20A8PQ5CZ79 823 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ANKRD20A2Q5SQ80 823 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 ANKRD20A1Q5TYW2 823 aa16.97■□□□□ 0.31
COL5A1-201ENST00000371817 TSPY2A6NKD2 308 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 EEF1DP29692 281 aaKnown RBP16.96■□□□□ 0.31
COL5A1-201ENST00000371817 HAND2P61296 217 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 IFIT5Q13325 482 aaKnown RBP16.96■□□□□ 0.31
COL5A1-201ENST00000371817 CUL4BQ13620 913 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 SKOR1P84550 965 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 TCP11Q8WWU5 503 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 IFIT1BQ5T764 474 aaKnown RBP16.96■□□□□ 0.31
COL5A1-201ENST00000371817 SLF2Q8IX21 1173 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 HAUS7Q99871 368 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 CTNND2Q9UQB3 1225 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 SYNRGQ9UMZ2 1314 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 GFAPP14136 432 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 BIRC2Q13490 618 aa16.96■□□□□ 0.31
COL5A1-201ENST00000371817 TRMT1LQ7Z2T5 733 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms