RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 ORC3Q9UBD5 711 aaPredicted RBP25.62■■□□□ 1.69
TPM4-201ENST00000300933 ELP1O95163 1332 aa25.62■■□□□ 1.69
TPM4-201ENST00000300933 UBE2Q2LH0YL09 131 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 SETDB2Q96T68 719 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 ZSCAN16Q9H4T2 348 aaPredicted RBP25.61■■□□□ 1.69
TPM4-201ENST00000300933 ZPR1O75312 459 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 EVCP57679 992 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 VPS37DQ86XT2 251 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 FNBP4Q8N3X1 1017 aaPredicted RBP25.61■■□□□ 1.69
TPM4-201ENST00000300933 LRP5O75197 1615 aa25.61■■□□□ 1.69
TPM4-201ENST00000300933 CYP7A1P22680 504 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 TDO2P48775 406 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 PHKBQ93100 1093 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 PRIMPOLQ96LW4 560 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 NUP62CLQ9H1M0 184 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 TFCP2L1Q9NZI6 479 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 NAA16Q6N069 864 aaPredicted RBP25.6■■□□□ 1.69
TPM4-201ENST00000300933 FUCA2Q9BTY2 467 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 ZSWIM5Q9P217 1185 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 NPHP1O15259 732 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 NFXL1Q6ZNB6 911 aa25.6■■□□□ 1.69
TPM4-201ENST00000300933 ARHGEF1Q92888 912 aaKnown RBP25.6■■□□□ 1.69
TPM4-201ENST00000300933 ANGEL1Q9UNK9 670 aaKnown RBP25.6■■□□□ 1.69
TPM4-201ENST00000300933 ZSCAN20P17040 1043 aaPredicted RBP25.59■■□□□ 1.69
TPM4-201ENST00000300933 CDC27P30260 824 aa25.59■■□□□ 1.69
TPM4-201ENST00000300933 SF3B3Q15393 1217 aaKnown RBP25.59■■□□□ 1.69
TPM4-201ENST00000300933 PPP4R3BQ5MIZ7 849 aa25.59■■□□□ 1.69
TPM4-201ENST00000300933 C8orf76Q96K31 380 aa25.59■■□□□ 1.69
TPM4-201ENST00000300933 ATRNO75882 1429 aa25.58■■□□□ 1.69
TPM4-201ENST00000300933 NARFQ9UHQ1 456 aa25.58■■□□□ 1.69
TPM4-201ENST00000300933 RPS6KA4O75676 772 aa25.58■■□□□ 1.68
TPM4-201ENST00000300933 LETM1O95202 739 aaPredicted RBP25.58■■□□□ 1.68
TPM4-201ENST00000300933 MEX3CQ5U5Q3 659 aaKnown RBP25.58■■□□□ 1.68
TPM4-201ENST00000300933 FBXL16Q8N461 479 aa25.58■■□□□ 1.68
TPM4-201ENST00000300933 TNMDQ9H2S6 317 aa25.58■■□□□ 1.68
TPM4-201ENST00000300933 BSDC1Q9NW68 430 aaPredicted RBP25.58■■□□□ 1.68
TPM4-201ENST00000300933 MINDY4BA8MYZ0 360 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 SH2B2O14492 632 aaPredicted RBP25.57■■□□□ 1.68
TPM4-201ENST00000300933 DMTNQ08495 405 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 CFAP45Q9UL16 551 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 KIF3AQ9Y496 699 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 TMEM67Q5HYA8 995 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 CCDC82Q8N4S0 544 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 FAM84BQ96KN1 310 aaPredicted RBP25.57■■□□□ 1.68
TPM4-201ENST00000300933 RTCBQ9Y3I0 505 aaKnown RBP25.57■■□□□ 1.68
TPM4-201ENST00000300933 CNTNAP4Q9C0A0 1308 aa25.57■■□□□ 1.68
TPM4-201ENST00000300933 METAP2P50579 478 aaKnown RBP eCLIP25.56■■□□□ 1.68
TPM4-201ENST00000300933 IGDCC4Q8TDY8 1250 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 RTL9Q8NET4 1388 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 COL5A3P25940 1745 aaPredicted RBP25.56■■□□□ 1.68
TPM4-201ENST00000300933 A0A087WWV3 80 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 DYNLL1P63167 89 aaKnown RBP25.56■■□□□ 1.68
TPM4-201ENST00000300933 MAP3K11Q16584 847 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 UVSSAQ2YD98 709 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 NLRP3Q96P20 1036 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 RREB1Q92766 1687 aa25.56■■□□□ 1.68
TPM4-201ENST00000300933 CYP2D7A0A087X1C5 515 aa25.55■■□□□ 1.68
TPM4-201ENST00000300933 RPS8P62241 208 aaKnown RBP25.55■■□□□ 1.68
TPM4-201ENST00000300933 APOA5Q6Q788 366 aa25.55■■□□□ 1.68
TPM4-201ENST00000300933 IFIT3O14879 490 aaKnown RBP25.55■■□□□ 1.68
TPM4-201ENST00000300933 CMTR1Q8N1G2 835 aaKnown RBP25.55■■□□□ 1.68
TPM4-201ENST00000300933 ERCC4Q92889 916 aaPredicted RBP25.55■■□□□ 1.68
TPM4-201ENST00000300933 COL1A1P02452 1464 aaPredicted RBP25.54■■□□□ 1.68
TPM4-201ENST00000300933 KIF28PB7ZC32 967 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 AP5Z1O43299 807 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 ME1P48163 572 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 TXNRD3Q86VQ6 643 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 GOLPH3LQ9H4A5 285 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 LY9Q9HBG7 655 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 PODXL2Q9NZ53 605 aa25.54■■□□□ 1.68
TPM4-201ENST00000300933 SPDYE4A6NLX3 237 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 DHX16O60231 1041 aaKnown RBP25.53■■□□□ 1.68
TPM4-201ENST00000300933 EVX2Q03828 476 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 CHAF1AQ13111 956 aaPredicted RBP25.53■■□□□ 1.68
TPM4-201ENST00000300933 CAVIN4Q5BKX8 364 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 MFSD6Q6ZSS7 791 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 CLIC4Q9Y696 253 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 AKNAD1Q5T1N1 836 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 CCAR1Q8IX12 1150 aaKnown RBP25.53■■□□□ 1.68
TPM4-201ENST00000300933 FBXO18Q8NFZ0 1043 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 ZNF384Q8TF68 577 aa25.53■■□□□ 1.68
TPM4-201ENST00000300933 CCDC192P0DO97 292 aa25.52■■□□□ 1.68
TPM4-201ENST00000300933 GTF2F1P35269 517 aaKnown RBP eCLIP25.52■■□□□ 1.681e-6■■■■□ 21.5
TPM4-201ENST00000300933 TYRO3Q06418 890 aa25.52■■□□□ 1.68
TPM4-201ENST00000300933 FAM196AQ6ZSG2 479 aa25.52■■□□□ 1.68
TPM4-201ENST00000300933 RCOR1Q9UKL0 485 aa25.52■■□□□ 1.68
TPM4-201ENST00000300933 UBE4AQ14139 1066 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 ALX1Q15699 326 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 SLC4A8Q2Y0W8 1093 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 SPC24Q8NBT2 197 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 ZBTB43O43298 467 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 TPTE2Q6XPS3 522 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 LUZP1Q86V48 1076 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 GJD4Q96KN9 370 aaPredicted RBP25.51■■□□□ 1.67
TPM4-201ENST00000300933 GNL3LQ9NVN8 582 aaKnown RBP25.51■■□□□ 1.67
TPM4-201ENST00000300933 MRVI1Q9Y6F6 885 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 ZNF804BA4D1E1 1349 aa25.51■■□□□ 1.67
TPM4-201ENST00000300933 MAGEB6P1A0A0J9YX57 407 aa25.5■■□□□ 1.67
TPM4-201ENST00000300933 PRDM1O75626 825 aa25.5■■□□□ 1.67
TPM4-201ENST00000300933 RFC4P35249 363 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms