RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF79Q15937 498 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 THAP8Q8NA92 274 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 PKD1P98161 4303 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 IGKV1OR2-108A0A075B7D4 117 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 ISLRO14498 428 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 IGKV3-20P01619 116 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 PAX9P55771 341 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 TMEM128Q5BJH2 165 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 TRIM63Q969Q1 353 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 RFNGQ9Y644 331 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 DNAH11Q96DT5 4516 aa12.23□□□□□ -0.45
CLN3-216ENST00000565316 H3BMQ9 156 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 FXYD7P58549 80 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 RAB11AP62491 216 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 OR2F1Q13607 317 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 SAMD13Q5VXD3 122 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 COQ8AQ8NI60 647 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 FAM210BQ96KR6 192 aa12.22□□□□□ -0.45
CLN3-216ENST00000565316 A0A0J9YX75 114 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 A0A1B0GVY2 172 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 PRSS46E5RG02 174 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 CFDP00746 253 aaPredicted RBP12.21□□□□□ -0.45
CLN3-216ENST00000565316 IAPPP10997 89 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 FAUP35544 74 aaKnown RBP12.21□□□□□ -0.45
CLN3-216ENST00000565316 PSG9Q00887 426 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 OR8I2Q8N0Y5 310 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 C17orf77Q96MU5 243 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 SLC35B3Q9H1N7 401 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 DKK2Q9UBU2 259 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 SLC45A2Q9UMX9 530 aa12.21□□□□□ -0.45
CLN3-216ENST00000565316 DYNC1H1Q14204 4646 aaKnown RBP12.21□□□□□ -0.45
CLN3-216ENST00000565316 PCLOQ9Y6V0 5065 aa12.21□□□□□ -0.46
CLN3-216ENST00000565316 TEX48A0A1B0GUV7 120 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 A8MTW9 85 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 MED6O75586 246 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 EMP1P54849 157 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 AP3S2P59780 193 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 FAM78BQ5VT40 261 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 GGNBP1Q5YKI7 109 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 TMED4Q7Z7H5 227 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 C1orf158Q8N1D5 194 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 OR4B1Q8NGF8 309 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 MCFD2Q8NI22 146 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 PPP1R14BQ96C90 147 aa12.2□□□□□ -0.46
CLN3-216ENST00000565316 IGHV3OR16-12A0A075B7B8 117 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 F6UB75 175 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 MEOX2P50222 304 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 OXA1LQ15070 435 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 EBLN2Q6P2I7 272 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 GSG1LQ6UXU4 331 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 C20orf173Q96LM9 149 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 CIB3Q96Q77 187 aaPredicted RBP12.19□□□□□ -0.46
CLN3-216ENST00000565316 SLC25A21Q9BQT8 299 aaPredicted RBP12.19□□□□□ -0.46
CLN3-216ENST00000565316 GOLT1BQ9Y3E0 138 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 TMED3Q9Y3Q3 217 aa12.19□□□□□ -0.46
CLN3-216ENST00000565316 RTL8CO15255 209 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 SYNGR2O43760 224 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 GALR1P47211 349 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 RPP30P78346 268 aaKnown RBP12.18□□□□□ -0.46
CLN3-216ENST00000565316 LGALS9BQ3B8N2 356 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 FAM222AQ5U5X8 452 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 TOMM5Q8N4H5 51 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 DEDD2Q8WXF8 326 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 NIPSNAP3BQ9BS92 247 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 SLC25A32Q9H2D1 315 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 RPRMQ9NS64 109 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 V9GYH0 126 aa12.18□□□□□ -0.46
CLN3-216ENST00000565316 ZNF98A6NK75 572 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 NOL3O60936 208 aaKnown RBP12.17□□□□□ -0.46
CLN3-216ENST00000565316 SFT2D2O95562 160 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 VAMP1P23763 118 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 PYDC2Q56P42 97 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 AMTNQ6UX39 209 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 OR4D5Q8NGN0 318 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 C16orf92Q96LL3 132 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 RSG1Q9BU20 258 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 MAGT1Q9H0U3 335 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 DOK5Q9P104 306 aa12.17□□□□□ -0.46
CLN3-216ENST00000565316 PAIP2BQ9ULR5 123 aaKnown RBP12.17□□□□□ -0.46
CLN3-216ENST00000565316 HBE1P02100 147 aa12.16□□□□□ -0.46
CLN3-216ENST00000565316 PPP1R1AQ13522 171 aa12.16□□□□□ -0.46
CLN3-216ENST00000565316 TMEM182Q6ZP80 229 aaPredicted RBP12.16□□□□□ -0.46
CLN3-216ENST00000565316 BPIFCQ8NFQ6 507 aa12.16□□□□□ -0.46
CLN3-216ENST00000565316 RYR1P21817 5038 aa12.16□□□□□ -0.46
CLN3-216ENST00000565316 LOC102723971A0A1B0GUV8 181 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 WRBO00258 174 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 OR1B1Q8NGR6 318 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 GPR82Q96P67 336 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 C7orf50Q9BRJ6 194 aaKnown RBP12.15□□□□□ -0.46
CLN3-216ENST00000565316 SLC25A22Q9H936 323 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 PLA2G2EQ9NZK7 142 aa12.15□□□□□ -0.46
CLN3-216ENST00000565316 YTHDF2Q9Y5A9 579 aaKnown RBP12.15□□□□□ -0.46
CLN3-216ENST00000565316 PRSS29PA6NIE9 313 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 M0R2N4 97 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 HOXB5P09067 269 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 ORM2P19652 201 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 GATA2P23769 480 aaPredicted RBP12.14□□□□□ -0.47
CLN3-216ENST00000565316 RRN3P1Q2M238 152 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 Q6ZR54 194 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms