RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TMED6Q8WW62 240 aa4.54□□□□□ -1.68
USP39-213ENST00000467885 DLX4Q92988 240 aaPredicted RBP4.54□□□□□ -1.68
USP39-213ENST00000467885 RCC1LQ96I51 464 aaKnown RBP4.54□□□□□ -1.68
USP39-213ENST00000467885 DUX3Q96PT4 197 aa4.54□□□□□ -1.68
USP39-213ENST00000467885 KRTAP4-2Q9BYR5 136 aa4.54□□□□□ -1.68
USP39-213ENST00000467885 SEPSECSQ9HD40 501 aaKnown RBP4.54□□□□□ -1.68
USP39-213ENST00000467885 PUS1Q9Y606 427 aaKnown RBP eCLIP4.54□□□□□ -1.68
USP39-213ENST00000467885 PXMP4Q9Y6I8 212 aa4.54□□□□□ -1.68
USP39-213ENST00000467885 TENM1Q9UKZ4 2725 aa4.54□□□□□ -1.68
USP39-213ENST00000467885 ATRQ13535 2644 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 TRAV5A0A0B4J249 113 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 A0A1W2PRX2 142 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 ZNF320A2RRD8 509 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 PRSS47A8MTI9 375 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 C17orf112F2Z3M2 114 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 LINC01619G3V211 115 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 NDUFA4O00483 81 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 HYPMO75409 117 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 TSPAN15O95858 294 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 ORM2P19652 201 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 CRYBB3P26998 211 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 FHITP49789 147 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 SULT1A2P50226 295 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 SLURP1P55000 103 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 RELQ04864 619 aaPredicted RBP4.53□□□□□ -1.68
USP39-213ENST00000467885 FHL3Q13643 280 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 USF2Q15853 346 aaPredicted RBP4.53□□□□□ -1.68
USP39-213ENST00000467885 ZNF726P1Q15940 193 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 DEFB136Q30KP8 78 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 NSUN5P1Q3KNT7 163 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 FAM106AQ4KMX7 169 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 FFAR4Q5NUL3 377 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 PXDC1Q5TGL8 231 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 MORN5Q5VZ52 161 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 SPATA31B1PQ5VZV4 182 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 ALKAL2Q6UX46 152 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 Q6ZRG5 221 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 KLHL30-AS1Q8NEE0 82 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 WFDC9Q8NEX5 89 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 OR10G4Q8NGN3 311 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 OR10G9Q8NGN4 311 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 OR10G7Q8NGN6 311 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 GATAD1Q8WUU5 269 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 MBD3L1Q8WWY6 194 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 DPF1Q92782 380 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 PHYHIPLQ96FC7 376 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 C17orf77Q96MU5 243 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 SMPXQ9UHP9 88 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 SMAD5-AS1Q9Y6J3 95 aa4.53□□□□□ -1.68
USP39-213ENST00000467885 IGHV3OR16-8A0A075B7F1 116 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 SEC14L6B5MCN3 397 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 UMAD1C9J7I0 102 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 BUB3O43684 328 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 EIF3GO75821 320 aaKnown RBP eCLIP4.52□□□□□ -1.69
USP39-213ENST00000467885 MBP02144 154 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 IL4P05112 153 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 FABP1P07148 127 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 CSN3P07498 182 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 M6PRP20645 277 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 EDN2P20800 178 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 ZP3P21754 424 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 CBLN1P23435 193 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 NPPCP23582 126 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 HOXD3P31249 432 aaPredicted RBP4.52□□□□□ -1.69
USP39-213ENST00000467885 ELLP55199 621 aaPredicted RBP4.52□□□□□ -1.69
USP39-213ENST00000467885 SYNJ2BPP57105 145 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 RAB2AP61019 212 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 B2MP61769 119 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 SUMO1P63165 101 aaKnown RBP4.52□□□□□ -1.69
USP39-213ENST00000467885 CCL20P78556 96 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 ACOT6Q3I5F7 207 aaPredicted RBP4.52□□□□□ -1.69
USP39-213ENST00000467885 FAM74A1Q5RGS3 127 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 FAM90A2PQ658T7 463 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 EIF5AL1Q6IS14 154 aaKnown RBP4.52□□□□□ -1.69
USP39-213ENST00000467885 MIR17HGQ75NE6 70 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 SPATA3Q8NHX4 192 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 LYPD6BQ8NI32 183 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 RNF125Q96EQ8 232 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 ZNF503Q96F45 646 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 FAM167A-AS1Q96KT0 104 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 UHRF2Q96PU4 802 aa4.52□□□□□ -1.69
USP39-213ENST00000467885 TRAV1-1A0A0B4J248 108 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 TMEM213A2RRL7 107 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 ZNF98A6NK75 572 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 NUDT19A8MXV4 375 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 CHEK1O14757 476 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 MRPS12O15235 138 aaKnown RBP4.51□□□□□ -1.69
USP39-213ENST00000467885 ZNF207O43670 478 aaKnown RBP4.51□□□□□ -1.69
USP39-213ENST00000467885 OR5G3P0C626 314 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 RAB5CP51148 216 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 LYZP61626 148 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 RPEL1Q2QD12 228 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 TMEM41BQ5BJD5 291 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 FAM78BQ5VT40 261 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 C10orf113Q5VZT2 155 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 C16orf54Q6UWD8 224 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 C12orf54Q6X4T0 127 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 SSX7Q7RTT5 188 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 LINC00305Q7Z4B0 112 aa4.51□□□□□ -1.69
USP39-213ENST00000467885 C1QL4Q86Z23 238 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms