RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DEFB131AP59861 70 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 ID3Q02535 119 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 C4orf46Q504U0 113 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 STPG3Q8N7X2 389 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 STXBP6Q8NFX7 210 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 OR51G1Q8NGK1 321 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 GRAMD2BQ96HH9 432 aa10.9□□□□□ -0.66
USP28-204ENST00000537642 PAIP2BQ9ULR5 123 aaKnown RBP10.9□□□□□ -0.66
USP28-204ENST00000537642 ZFP92A6NM28 416 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 PRSS46E5RG02 174 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 ZNF90Q03938 601 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 CNPY1Q3B7I2 92 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 LEMD1Q68G75 181 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 OR4D5Q8NGN0 318 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 DCANP1Q8TF63 244 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 RNF183Q96D59 192 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 C20orf85Q9H1P6 137 aa10.89□□□□□ -0.67
USP28-204ENST00000537642 PLECQ15149 4684 aaKnown RBP10.88□□□□□ -0.67
USP28-204ENST00000537642 IGKV1OR2-108A0A075B7D4 117 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 H3BP45 60 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 BUB3O43684 328 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 IFNA21P01568 189 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 POLR2GP62487 172 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP28-204ENST00000537642 RPP30P78346 268 aaKnown RBP10.88□□□□□ -0.67
USP28-204ENST00000537642 SPANXN5Q5MJ07 72 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 THAP8Q8NA92 274 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 RNF125Q96EQ8 232 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 CSTL1Q9H114 145 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 TENM2Q9NT68 2774 aa10.88□□□□□ -0.67
USP28-204ENST00000537642 HELTA6NFD8 242 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 TCRBP04435 133 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 ZNF688P0C7X2 276 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 NKX2-1P43699 371 aaPredicted RBP10.87□□□□□ -0.67
USP28-204ENST00000537642 EIF2B2P49770 351 aaKnown RBP10.87□□□□□ -0.67
USP28-204ENST00000537642 LINC00299Q6ZSB3 139 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 MITD1Q8WV92 249 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 TRGV9Q99603 122 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 CCDC32Q9BV29 185 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 PBDC1Q9BVG4 233 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 DNAH1Q9P2D7 4330 aa10.87□□□□□ -0.67
USP28-204ENST00000537642 A6NHS1 94 aa10.86□□□□□ -0.67
USP28-204ENST00000537642 AP2S1P53680 142 aaPredicted RBP10.86□□□□□ -0.67
USP28-204ENST00000537642 OR2F1Q13607 317 aa10.86□□□□□ -0.67
USP28-204ENST00000537642 OR8G2PQ6IF36 304 aa10.86□□□□□ -0.67
USP28-204ENST00000537642 IL17DQ8TAD2 202 aa10.86□□□□□ -0.67
USP28-204ENST00000537642 STRAPQ9Y3F4 350 aaKnown RBP10.86□□□□□ -0.67
USP28-204ENST00000537642 TRAV6A0A075B6T7 132 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 A0A0J9YWU9 116 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 SSSCA1O60232 199 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 FABP1P07148 127 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 LYZP61626 148 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 EWSR1Q01844 656 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP28-204ENST00000537642 IAH1Q2TAA2 248 aaPredicted RBP10.85□□□□□ -0.67
USP28-204ENST00000537642 SIGLEC15Q6ZMC9 328 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 PSENENQ9NZ42 101 aa10.85□□□□□ -0.67
USP28-204ENST00000537642 ALMS1Q8TCU4 4167 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 KNCNA6PVL3 124 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 PMS2P5A8MQ11 134 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 SNRPGP15A8MWD9 76 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 PAX9P55771 341 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 ACOT7LQ6ZUV0 252 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 STHQ8IWL8 128 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 ZBTB8BQ8NAP8 495 aaPredicted RBP10.84□□□□□ -0.67
USP28-204ENST00000537642 SMIM8Q96KF7 97 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 NRN1Q9NPD7 142 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 NUDT15Q9NV35 164 aa10.84□□□□□ -0.67
USP28-204ENST00000537642 CCNKO75909 580 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 SCGB1D2O95969 90 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 CA1P00915 261 aaPredicted RBP10.83□□□□□ -0.68
USP28-204ENST00000537642 NUP62P37198 522 aaPredicted RBP10.83□□□□□ -0.68
USP28-204ENST00000537642 PSMG4Q5JS54 123 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 TRPT1Q86TN4 253 aaKnown RBP10.83□□□□□ -0.68
USP28-204ENST00000537642 GATAD1Q8WUU5 269 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 S100ZQ8WXG8 99 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 SEC22CQ9BRL7 303 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 GSKIPQ9P0R6 139 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 TBC1D24Q9ULP9 559 aa10.83□□□□□ -0.68
USP28-204ENST00000537642 RCL1Q9Y2P8 373 aaKnown RBP10.83□□□□□ -0.68
USP28-204ENST00000537642 LCE6AA0A183 80 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 CCSO14618 274 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 GIG44P09565 113 aaPredicted RBP10.82□□□□□ -0.68
USP28-204ENST00000537642 GATA2P23769 480 aaPredicted RBP10.82□□□□□ -0.68
USP28-204ENST00000537642 AKR1C1Q04828 323 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 TMEM14EPQ6UXP3 125 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 TMEM182Q6ZP80 229 aaPredicted RBP10.82□□□□□ -0.68
USP28-204ENST00000537642 ZNF431Q8TF32 576 aaPredicted RBP10.82□□□□□ -0.68
USP28-204ENST00000537642 SEPSECSQ9HD40 501 aaKnown RBP10.82□□□□□ -0.68
USP28-204ENST00000537642 PFDN2Q9UHV9 154 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 HYDINQ4G0P3 5121 aa10.82□□□□□ -0.68
USP28-204ENST00000537642 FAM240BA0A1B0GVZ2 78 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 CFDP00746 253 aaPredicted RBP10.81□□□□□ -0.68
USP28-204ENST00000537642 MBPP02686 304 aaPredicted RBP10.81□□□□□ -0.68
USP28-204ENST00000537642 H2AFB2P0C5Z0 115 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 ACTL10Q5JWF8 245 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 C1orf194Q5T5A4 169 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 TMEM144Q7Z5S9 345 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 RAB40CQ96S21 281 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 RARRES2Q99969 163 aa10.81□□□□□ -0.68
USP28-204ENST00000537642 SMCO3A2RU48 225 aa10.8□□□□□ -0.68
USP28-204ENST00000537642 TSC22D2O75157 780 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms