RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FAM71F2Q6NXP2 309 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 C17orf82Q86X59 251 aaPredicted RBP13.12□□□□□ -0.31
COL17A1-202ENST00000369733 TRAV8-2A0A0B4J237 113 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 NPSP0C0P6 89 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 C10orf55Q5SWW7 151 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 METRNQ9UJH8 293 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 TRPM7Q96QT4 1865 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 IGHV1-18A0A0C4DH31 117 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 D6R8Y8 96 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 BSPH1Q075Z2 132 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 GAGE13Q4V321 117 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 PRB3Q04118 309 aaPredicted RBP13.11□□□□□ -0.31
COL17A1-202ENST00000369733 DDB2Q92466 427 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 SCN5AQ14524 2016 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 IGKV3-20P01619 116 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 PPIFP30405 207 aaKnown RBP13.11□□□□□ -0.31
COL17A1-202ENST00000369733 CD177Q8N6Q3 437 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 MRAP2Q96G30 205 aa13.11□□□□□ -0.31
COL17A1-202ENST00000369733 CEACAM4O75871 244 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 TCRAP04437 139 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 MYOD1P15172 320 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 MED12Q93074 2177 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 HS3ST6Q96QI5 342 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 SPRR3Q9UBC9 169 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 SRRM5B3KS81 715 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 BCL6BQ8N143 479 aaPredicted RBP13.1□□□□□ -0.31
COL17A1-202ENST00000369733 SLC25A2Q9BXI2 301 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 CEP290O15078 2479 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 GAGE12BA1L429 117 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 LY6EQ16553 131 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 EXOC3-AS1Q8N2X6 119 aa13.1□□□□□ -0.31
COL17A1-202ENST00000369733 TRGV3P03979 118 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 CLEC19AQ6UXS0 136 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 ABCA7Q8IZY2 2146 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 TMEM133Q9H2Q1 129 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 CHTOPQ9Y3Y2 248 aaKnown RBP13.09□□□□□ -0.31
COL17A1-202ENST00000369733 WIPF3A6NGB9 483 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 NBR2O15453 112 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 SELLP14151 372 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 Q6ZWC4 215 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 GTSCR1Q86UQ5 136 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 RPUSD1Q9UJJ7 312 aaKnown RBP13.09□□□□□ -0.31
COL17A1-202ENST00000369733 CD5LO43866 347 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 WISP1O95388 367 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 ESDP10768 282 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 RNASE4P34096 147 aaKnown RBP13.09□□□□□ -0.31
COL17A1-202ENST00000369733 ZNF138P52744 262 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 ANAPC13Q9BS18 74 aa13.09□□□□□ -0.31
COL17A1-202ENST00000369733 NCR2O95944 276 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 RPRMLQ8N4K4 120 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 MCRIP2Q9BUT9 160 aaKnown RBP13.08□□□□□ -0.32
COL17A1-202ENST00000369733 NPFFO15130 113 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 TEX29Q8N6K0 151 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 SMPXQ9UHP9 88 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 RTTNQ86VV8 2226 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 IGHV3OR16-12A0A075B7B8 117 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 FXYD7P58549 80 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 SNRPD3P62318 126 aaKnown RBP13.08□□□□□ -0.32
COL17A1-202ENST00000369733 ZNF815PA8K554 130 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 TMPRSS3P57727 454 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 CDPF1Q6NVV7 123 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 JMJD8Q96S16 334 aa13.08□□□□□ -0.32
COL17A1-202ENST00000369733 KIR3DS1Q14943 382 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 ZNF524Q96C55 264 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 PMS2P5A8MQ11 134 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 IL18BPO95998 194 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 DNAL4O96015 105 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 SUMO2P61956 95 aaKnown RBP13.07□□□□□ -0.32
COL17A1-202ENST00000369733 LINC01560Q8TB33 94 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 SCRT1Q9BWW7 348 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 NPIPB5A8MRT5 1133 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 IL15RAQ13261 267 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 LYPD6BQ8NI32 183 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 SLC50A1Q9BRV3 221 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 RNASE1P07998 156 aaKnown RBP13.07□□□□□ -0.32
COL17A1-202ENST00000369733 ZFP36L1Q07352 338 aaKnown RBP13.07□□□□□ -0.32
COL17A1-202ENST00000369733 LYZL1Q6UWQ5 148 aa13.07□□□□□ -0.32
COL17A1-202ENST00000369733 ORMDL2Q53FV1 153 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 ZNF329Q86UD4 541 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 F2Z2F3 143 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 H7C1H1 209 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 SP9P0CG40 484 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 SLC25A39Q9BZJ4 359 aaPredicted RBP13.06□□□□□ -0.32
COL17A1-202ENST00000369733 LINC00479Q96M42 142 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 ZCCHC24Q8N2G6 241 aaKnown RBP13.06□□□□□ -0.32
COL17A1-202ENST00000369733 C18orf32Q8TCD1 76 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 RAX2Q96IS3 184 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 IGLC2P0DOY2 106 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 IGLC3P0DOY3 106 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 B3GALT5-AS1P59052 145 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 TNFRSF18Q9Y5U5 241 aa13.06□□□□□ -0.32
COL17A1-202ENST00000369733 IGHV3OR16-10A0A075B7F0 116 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 IGHV4-39P01824 125 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 CYYR1Q96J86 154 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 C9orf172C9J069 976 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 IGHV1-46P01743 117 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 TRGV9Q99603 122 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 IGKV2-40A0A087WW87 121 aaPredicted RBP13.05□□□□□ -0.32
COL17A1-202ENST00000369733 PSMB11A5LHX3 300 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 A8MWV9 139 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms