RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ACP1P24666 158 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 FAM106AQ4KMX7 169 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 SPRNQ5BIV9 151 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 BLNKQ8WV28 456 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 RAB37Q96AX2 223 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 ZNF492Q9P255 531 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 NAV3Q8IVL0 2385 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 PGPA6NDG6 321 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 A6NDN8 102 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 C9orf172C9J069 976 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 CHEK1O14757 476 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 LTAP01374 205 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 FABP6P51161 128 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 LOXL1Q08397 574 aaPredicted RBP5.46□□□□□ -1.54
VPS39-202ENST00000348544 SAMD13Q5VXD3 122 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 RUSC1-AS1Q66K80 236 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 ADAMTSL5Q6ZMM2 481 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 BOD1L2Q8IYS8 172 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 TNFRSF14Q92956 283 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 CLUHP3Q96NS8 147 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 AP1S3Q96PC3 154 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 DYSFO75923 2080 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 A0A1W2PPM0 123 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 SRRM5B3KS81 715 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 H3BTX0 84 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 K7ESF4 209 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 SAA1P0DJI8 122 aaPredicted RBP5.46□□□□□ -1.54
VPS39-202ENST00000348544 CT45A6P0DMU7 189 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 CT45A5P0DMU8 189 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 CT45A7P0DMV0 189 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 MEF2CQ06413 473 aaPredicted RBP5.46□□□□□ -1.54
VPS39-202ENST00000348544 DUX4L9Q6RFH8 374 aaPredicted RBP5.46□□□□□ -1.54
VPS39-202ENST00000348544 LINC00305Q7Z4B0 112 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 PDPNQ86YL7 162 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.46□□□□□ -1.54
VPS39-202ENST00000348544 VSTM2AQ8TAG5 236 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 NPIPB3Q92617 1050 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 GFRA4Q9GZZ7 299 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 AP5S1Q9NUS5 200 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 JKAMPQ9P055 326 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 SPCS1Q9Y6A9 102 aa5.46□□□□□ -1.54
VPS39-202ENST00000348544 ARFGEF3Q5TH69 2177 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 DSCAML1Q8TD84 2053 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.45□□□□□ -1.54
VPS39-202ENST00000348544 ZNF785A8K8V0 405 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 NPIPB6E9PJ23 425 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 DLL1O00548 723 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 PRSS57Q6UWY2 283 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 GCSAMQ8N6F7 178 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 OR2Z1Q8NG97 314 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 CACNG8Q8WXS5 425 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 PERPQ96FX8 193 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 ABHD17AQ96GS6 310 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 ADTRPQ96IZ2 230 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 NDUFA4L2Q9NRX3 87 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 THYN1Q9P016 225 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 ABI3Q9P2A4 366 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 INSIG2Q9Y5U4 225 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 URB1O60287 2271 aaKnown RBP5.45□□□□□ -1.54
VPS39-202ENST00000348544 PPIAL4EA0A075B759 164 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 TRAV8-1A0A0A6YYK1 113 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 PPIAL4CA0A0B4J2A2 164 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 TEX48A0A1B0GUV7 120 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 TCRBV4S1A1TA0A5B7 111 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 CGB1A6NKQ9 187 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 SMAD7O15105 426 aaKnown RBP5.45□□□□□ -1.54
VPS39-202ENST00000348544 PPIAL4FP0DN26 164 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 HOXC12P31275 282 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 ATP5IP56385 69 aaPredicted RBP5.45□□□□□ -1.54
VPS39-202ENST00000348544 HSD52Q0P140 79 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 FAM201AQ5SY85 155 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 CIARTQ8N365 385 aaPredicted RBP5.45□□□□□ -1.54
VPS39-202ENST00000348544 OR1L4Q8NGR5 311 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 DPF1Q92782 380 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 C18orf15Q96N68 181 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 SPRR3Q9UBC9 169 aa5.45□□□□□ -1.54
VPS39-202ENST00000348544 DSCAMO60469 2012 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 KBTBD11-OT1A0A1B0GTJ5 212 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 TCRAP04437 139 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 ARMS2P0C7Q2 107 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 AZU1P20160 251 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 MEOX1P50221 254 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 PLP1P60201 277 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 WT1-ASQ06250 92 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 MSMPQ1L6U9 139 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 ABHD17BQ5VST6 288 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 S100A7AQ86SG5 101 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 OR8A1Q8NGG7 326 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 OR5A1Q8NGJ0 315 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 FMC1Q96HJ9 113 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 DEFB127Q9H1M4 99 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 PILRBQ9UKJ0 227 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 AHCTF1Q8WYP5 2266 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 A1L4Q6 167 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 C22orf46C9J442 243 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 IGKV3-15P01624 115 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 SMIM17P0DL12 118 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 C10orf55Q5SWW7 151 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 INO80CQ6PI98 192 aaPredicted RBP5.44□□□□□ -1.54
VPS39-202ENST00000348544 PCP2Q8IVA1 136 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms