RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CD300EQ496F6 205 aaPredicted RBP14.34□□□□□ -0.11
SYNPO-201ENST00000307662 SPTA1P02549 2419 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 C9JQL5 133 aa14.33□□□□□ -0.11
SYNPO-201ENST00000307662 CD7P09564 240 aa14.33□□□□□ -0.11
SYNPO-201ENST00000307662 BSPH1Q075Z2 132 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 BMPERQ8N8U9 685 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 GTSF1LQ9H1H1 148 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 FOXF2Q12947 444 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 KIR3DS1Q14943 382 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 CENPVQ7Z7K6 275 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-201ENST00000307662 C20orf144Q9BQM9 153 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 TMEM133Q9H2Q1 129 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 SLC25A15Q9Y619 301 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 SPSB3Q6PJ21 355 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 ATXN8Q156A1 80 aa14.33□□□□□ -0.12
SYNPO-201ENST00000307662 LOC102723996A0A087X1L8 192 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 ZIC4Q8N9L1 334 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 PRDM6Q9NQX0 595 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 PGPEP1Q9NXJ5 209 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 IGHV2-70P01814 119 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 LINC01560Q8TB33 94 aa14.32□□□□□ -0.12
SYNPO-201ENST00000307662 SRSF6Q13247 344 aaKnown RBP14.32□□□□□ -0.12
SYNPO-201ENST00000307662 KLF17Q5JT82 389 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-201ENST00000307662 EFNA2O43921 213 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 NCR2O95944 276 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 TCRAP04437 139 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 PRR31Q5SQ13 230 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 SPAG8Q99932 426 aaPredicted RBP14.31□□□□□ -0.12
SYNPO-201ENST00000307662 SELENOKQ9Y6D0 94 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 NPIPB5A8MRT5 1133 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 CHD5Q8TDI0 1954 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 GREB1Q4ZG55 1949 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 IGKV3D-20A0A0C4DH25 116 aa14.31□□□□□ -0.12
SYNPO-201ENST00000307662 PNRC2Q9NPJ4 139 aaKnown RBP14.31□□□□□ -0.12
SYNPO-201ENST00000307662 C9orf106Q8NAJ2 232 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 PRTN3P24158 256 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 Q0VG73 95 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 LYZL1Q6UWQ5 148 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 SNHG12Q9BXW3 62 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 C11orf68Q9H3H3 251 aaKnown RBP14.3□□□□□ -0.12
SYNPO-201ENST00000307662 M0R2P5 195 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 RNF144BQ7Z419 303 aa14.3□□□□□ -0.12
SYNPO-201ENST00000307662 DLX4Q92988 240 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-201ENST00000307662 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-201ENST00000307662 TMEM238C9JI98 176 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 CD28P10747 220 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 GLMPQ8WWB7 406 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 TRBV6-6A0A0A6YYG2 114 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 LHFPL4Q7Z7J7 247 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 NEU4Q8WWR8 484 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-201ENST00000307662 LINC01587Q99440 93 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 TMEM155Q4W5P6 130 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 NPFFR1Q9GZQ6 430 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 NTF4P34130 210 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 EXOC3-AS1Q8N2X6 119 aa14.29□□□□□ -0.12
SYNPO-201ENST00000307662 PLAURQ03405 335 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 ATP5J2P56134 94 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 PMS2P5A8MQ11 134 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 ITLN2Q8WWU7 325 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-201ENST00000307662 SLC25A39Q9BZJ4 359 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-201ENST00000307662 APC2O95996 2303 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 MAJINQ3KP22 176 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 IGKV2-40A0A087WW87 121 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-201ENST00000307662 IGKV2D-40P01614 121 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-201ENST00000307662 SSBP2P81877 361 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-201ENST00000307662 Q6ZS49 121 aa14.28□□□□□ -0.12
SYNPO-201ENST00000307662 GHRHP01286 108 aa14.27□□□□□ -0.12
SYNPO-201ENST00000307662 CFAP161Q6P656 301 aa14.27□□□□□ -0.12
SYNPO-201ENST00000307662 CFPP27918 469 aa14.27□□□□□ -0.12
SYNPO-201ENST00000307662 CDKN1AP38936 164 aa14.27□□□□□ -0.12
SYNPO-201ENST00000307662 TRAV3A0A0B4J244 114 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 TDGF1P13385 188 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 C10orf91Q5T1B1 145 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 TRGV9Q99603 122 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 RPUSD1Q9UJJ7 312 aaKnown RBP14.27□□□□□ -0.13
SYNPO-201ENST00000307662 PFN1P07737 140 aaKnown RBP14.27□□□□□ -0.13
SYNPO-201ENST00000307662 FXYD7P58549 80 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 SCRT1Q9BWW7 348 aa14.27□□□□□ -0.13
SYNPO-201ENST00000307662 RHOGP84095 191 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 TMEM42Q69YG0 159 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 C5orf63A6NC05 138 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 PSPNO60542 156 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 IGHV3-11P01762 117 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 OCIAD2Q56VL3 154 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 IGHV3-64A0A075B6Q5 118 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 C15orf62A8K5M9 175 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 C10orf55Q5SWW7 151 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 A0A0G2JRQ6 117 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 FAM57AQ8TBR7 257 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 TNFRSF14Q92956 283 aa14.26□□□□□ -0.13
SYNPO-201ENST00000307662 SMAD7O15105 426 aaKnown RBP14.25□□□□□ -0.13
SYNPO-201ENST00000307662 PRB3Q04118 309 aaPredicted RBP14.25□□□□□ -0.13
SYNPO-201ENST00000307662 ADAMTSL5Q6ZMM2 481 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 CST9LQ9H4G1 147 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 KIF26BQ2KJY2 2108 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 TRIOBPQ9H2D6 2365 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 ASXL3Q9C0F0 2248 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 TRAV8-1A0A0A6YYK1 113 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 IGHV1-18A0A0C4DH31 117 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 PRR19A6NJB7 356 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms