RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TTTY12Q9BZ98 90 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 ULBP3Q9BZM4 244 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 NDUFB11Q9NX14 153 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 IDI2-AS1Q9NZ38 188 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 GLTPQ9NZD2 209 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 IL36BQ9NZH7 164 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 TIMM22Q9Y584 194 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 OVOS2A0A0G2JMS6 1433 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 OVOS2A0A0J9YW53 1432 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 OVOS2Q6IE36 1432 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 ADGRL3Q9HAR2 1447 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 ZNF518AQ6AHZ1 1483 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 ADAMTS12P58397 1594 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 TMEM131LA2VDJ0 1609 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 DEPDC5O75140 1603 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 SPTAN1Q13813 2472 aaKnown RBP1.28□□□□□ -2.2
CD44-234ENST00000531873 LRRK2Q5S007 2527 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 SETD2Q9BYW2 2564 aaPredicted RBP1.28□□□□□ -2.2
CD44-234ENST00000531873 CFAP54Q96N23 3096 aa1.28□□□□□ -2.2
CD44-234ENST00000531873 MKI67P46013 3256 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 HELZ2Q9BYK8 2649 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 ZFYVE26Q68DK2 2539 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 NAV3Q8IVL0 2385 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 SORL1Q92673 2214 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 MYH7BA7E2Y1 1941 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 STRCP1A6NGW2 1772 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 SUPT6HQ7KZ85 1726 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 ADGBQ8N7X0 1667 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TIAM1Q13009 1591 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 NEXMIFQ5QGS0 1516 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 ABCA10Q8WWZ4 1543 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 MYOM2P54296 1465 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TMEM2Q9UHN6 1383 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 IGHV3-64A0A075B6Q5 118 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TRAV7A0A075B6U4 112 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TMSB15BA0A087X1C1 80 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TRAV41A0A0B4J266 112 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 LY6LH3BQJ8 138 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 J3QKU1 62 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 PEBP1P30086 187 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 AP1S1P61966 158 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 RPL18Q07020 188 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 LYZL1Q6UWQ5 148 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 SLC35E3Q7Z769 313 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 OR6V1Q8N148 313 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 DYNAPQ8N1N2 210 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 C12orf45Q8N5I9 185 aaPredicted RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 ANKRD29Q8N6D5 301 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 ZNF676Q8N7Q3 588 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 OR4X2Q8NGF9 303 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 CDC26Q8NHZ8 85 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 MRPL30Q8TCC3 161 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 ACOT12Q8WYK0 555 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 TSPAN32Q96QS1 320 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 DERL1Q9BUN8 251 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 C11orf68Q9H3H3 251 aaKnown RBP1.27□□□□□ -2.21
CD44-234ENST00000531873 PRTFDC1Q9NRG1 225 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 C14orf105Q9NVL8 296 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 FBXL12Q9NXK8 326 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 NAT8Q9UHE5 227 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 NOTCH1P46531 2555 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 JMJD1CQ15652 2540 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 C2CD3Q4AC94 2353 aa1.27□□□□□ -2.21
CD44-234ENST00000531873 ZNF142P52746 1687 aaPredicted RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 UBR5O95071 2799 aaPredicted RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 FLNCQ14315 2725 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 NBEAL1Q6ZS30 2694 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 NCOA2Q15596 1464 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 MLH3Q9UHC1 1453 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 MUC3AQ02505 3323 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 NUP155O75694 1391 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 ROBO3Q96MS0 1386 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 C5orf42Q9H799 3197 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 IGHV1-18A0A0C4DH31 117 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 hADV38S2A0JD32 116 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 SIGLEC16A6NMB1 481 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 ZNF705FA8MVS1 300 aaPredicted RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 IGKV1-5P01602 117 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 C1QAP02745 245 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 CST2P09228 141 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 TPI1P60174 286 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 KRTAP12-3P60328 96 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 HIST1H3AP68431 136 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 MRPS25P82663 173 aaKnown RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 H3F3AP84243 136 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 C9orf64Q5T6V5 341 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 ZNF705AQ6ZN79 300 aaPredicted RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 Q6ZTI0 123 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 RPP25LQ8N5L8 163 aaKnown RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 SPACA4Q8TDM5 124 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 BORCS7Q96B45 105 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 MRPS24Q96EL2 167 aaKnown RBP1.26□□□□□ -2.21
CD44-234ENST00000531873 SIGMAR1Q99720 223 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 TIMM21Q9BVV7 248 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 UQCC1Q9NVA1 299 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 DOK5Q9P104 306 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 SPTA1P02549 2419 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 LRRC37A3O60309 1634 aa1.26□□□□□ -2.21
CD44-234ENST00000531873 WDR87Q6ZQQ6 2873 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 197.6 ms